hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19025619/chunk_1/iprscan-20080502-19025619.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0997 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 71.9 8.2e-17 5 SM00225 70.7 1.9e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00225 1/1 26 123 .. 1 114 [] 70.7 1.9e-16 SM00355 1/5 218 244 .. 1 23 [] 9.7 25 SM00355 2/5 423 445 .. 1 23 [] 8.0 39 SM00355 3/5 536 556 .. 1 23 [] 11.4 16 SM00355 4/5 580 602 .. 1 23 [] 20.5 0.23 SM00355 5/5 608 630 .. 1 23 [] 22.2 0.073 Alignments of top-scoring domains: SM00225: domain 1 of 1, from 26 to 123: score 70.7, E = 1.9e-16 *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes. cD+ + +++ f+a HkavLaac S+yF+ f ++ KIAA0997 26 CDCCIAIDD---------IYFQA--HKAVLAAC---SSYFRMFFMNh 58 ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe ++++ + +l+ + +s+e+F+++L+f+Y +k+ ++ + e++ KIAA0997 59 qhstaqLNLSN----MKISAECFDLILQFMYLgKIMTAPS---SFEQFKV 101 lAdfldSYGqip.lvelCeefllknl<-* + ++l q+ ++ ++ e++ + + KIAA0997 102 AMNYL----QLYnVPDCLEDIQDADC 123 SM00355: domain 1 of 5, from 218 to 244: score 9.7, E = 25 *->ykCpigCgksfssk.aLkrHmr....vH<-* ++C+ Cg+ fs ++ L +H+ + +++H KIAA0997 218 FTCDS-CGFGFSCEkLLDEHVLtctnRH 244 SM00355: domain 2 of 5, from 423 to 445: score 8.0, E = 39 *->ykCpigCgksfssk.aLkrHmr.vH<-* C++ Cg + ++++L H+ +H KIAA0997 423 ASCEL-CGLT-ITEeDLSSHYLaKH 445 SM00355: domain 3 of 5, from 536 to 556: score 11.4, E = 16 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp Cg++f +++ ++Hm KIAA0997 536 FRCPN-CGQRFETEnLVVEHMS-- 556 SM00355: domain 4 of 5, from 580 to 602: score 20.5, E = 0.23 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk f ++ +L++H+ vH KIAA0997 580 HFCNL-CGKGFYQRcHLREHYTVH 602 SM00355: domain 5 of 5, from 608 to 630: score 22.2, E = 0.073 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cgk+f ++++L+ H +H KIAA0997 608 FVCQT-CGKQFLRErQLRLHNDMH 630 //