hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18543738/chunk_1/iprscan-20080502-18543738.nocrc
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Query sequence: KIAA0992
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00408                                                 140.2    2.2e-37   3
SM00409                                                 127.9    1.1e-33   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/3     396   482 ..     1    58 []    36.4  3.8e-06
SM00408    1/3     402   471 ..     1    56 []    46.5  3.6e-09
SM00409    2/3     530   615 ..     1    58 []    46.7  3.2e-09
SM00408    2/3     536   604 ..     1    56 []    54.8  1.1e-11
SM00409    3/3     629   715 ..     1    58 []    44.8  1.2e-08
SM00408    3/3     635   704 ..     1    56 []    38.9    7e-07

Alignments of top-scoring domains:
SM00409: domain 1 of 3, from 396 to 482: score 36.4, E = 3.8e-06
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       +++   eG +vt+tC++++++++ i+W++++++ ++++++ + +++
    KIAA0992   396    LKhYKIFEGMPVTFTCrVAgnpkpKIYWFkdgkqispksdhytiqrd 442  

                   ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    +++ +L+ +  t++D    G+Yt +a ++ g +s+  + +L V+   
    KIAA0992   443 ldgtcsLHTtASTLDDD---GNYTIMAAnpQGRISC--TGRLMVQ    482  

SM00408: domain 1 of 3, from 402 to 471: score 46.5, E = 3.6e-09
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
                       eG +Vt+tC+++g+p p I W+k+gk++++++++ + +++ ++  +
    KIAA0992   402    FEGMPVTFTCRVAGNPKPKIYWFKdGKQISpksdhytiqrdldGTCS 448  

                   LtiknvsleDsGlYtCvArNsvg<-*
                   L+ +  +l+D+G+Yt  A N+ g   
    KIAA0992   449 LHTTASTLDDDGNYTIMAANPQG    471  

SM00409: domain 2 of 3, from 530 to 615: score 46.7, E = 3.2e-09
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p+++tv+eG   ++ C++s+ +++ ++W  ++++ ++++ ++   + 
    KIAA0992   530    PGdLTVQEGKLCRMDCkVSglptpDLSWQldgkpvrpdsahkmlvre 576  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++ ++L+I++vt  D+   G+YtC at+++g+ s   + +L V    
    KIAA0992   577 ngvhsLIIePVTSRDA---GIYTCIATnrAGQNSF--SLELVVA    615  

SM00408: domain 2 of 3, from 536 to 604: score 54.8, E = 1.1e-11
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL
                      +eG   ++ C++sg p+p+ +W  +gkp+ +++ ++   ++++  +L
    KIAA0992   536    QEGKLCRMDCKVSGLPTPDLSWQLdGKPVRpdsahkmlvrenGVHSL 582  

                   tiknvsleDsGlYtCvArNsvg<-*
                    i++v+  D+G+YtC+A+N++g   
    KIAA0992   583 IIEPVTSRDAGIYTCIATNRAG    604  

SM00409: domain 3 of 3, from 629 to 715: score 44.8, E = 1.2e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       +++ v  G +v+L+C++ + ++++i+W++ + + ++++++ + +++
    KIAA0992   629    LQnTGVADGYPVRLECrVLgvpppQIFWKkeneslthstdrvsmhqd 675  

                   ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +++   L I+++t+eD+   G Yt  a++ +g +s+  +++L V+   
    KIAA0992   676 nhgyicLLIqGATKEDA---GWYTVSAKneAGIVSC--TARLDVY    715  

SM00408: domain 3 of 3, from 635 to 704: score 38.9, E = 7e-07
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst
                        G +V+L+C++ g p p+I W+k++++l +++++ + ++++++   
    KIAA0992   635    ADGYPVRLECRVLGVPPPQIFWKKeNESLThstdrvsmhqdnhGYIC 681  

                   LtiknvsleDsGlYtCvArNsvg<-*
                   L i+ +++eD+G Yt +A N++g   
    KIAA0992   682 LLIQGATKEDAGWYTVSAKNEAG    704  

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