hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18543738/chunk_1/iprscan-20080502-18543738.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0992 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.ls Immunoglobulin I-set domain 302.3 8.3e-88 3 PF07679.6.fs Immunoglobulin I-set domain 296.5 4.8e-86 3 PF00047.15.ls Immunoglobulin domain 104.8 2.3e-28 3 PF00047.15.fs Immunoglobulin domain 100.4 5.1e-27 3 PF07686.7.ls Immunoglobulin V-set domain 13.5 0.0021 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.fs 1/3 390 481 .. 1 96 [] 75.3 2.4e-21 PF07679.6.ls 1/3 390 481 .. 1 96 [] 77.2 4.7e-20 PF00047.15.ls 1/3 404 466 .. 1 65 [] 41.4 2.8e-09 PF00047.15.fs 1/3 404 463 .. 1 62 [. 40.0 3.1e-10 PF07679.6.ls 2/3 524 614 .. 1 96 [] 134.9 2e-37 PF07679.6.fs 2/3 524 614 .. 1 96 [] 133.0 3.5e-38 PF00047.15.ls 2/3 538 599 .. 1 65 [] 36.0 1.2e-07 PF00047.15.fs 2/3 538 599 .. 1 65 [] 34.1 1.3e-08 PF07679.6.ls 3/3 623 714 .. 1 96 [] 90.2 6e-24 PF07679.6.fs 3/3 623 714 .. 1 96 [] 88.2 4.1e-25 PF00047.15.ls 3/3 637 699 .. 1 65 [] 27.4 4.8e-05 PF00047.15.fs 3/3 637 696 .. 1 62 [. 26.2 1.9e-06 Alignments of top-scoring domains: PF07679.6.fs: domain 1 of 3, from 390 to 481: score 75.3, E = 2.4e-21 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P F+ k+k ++ eG +++f+C+V G+P+P++ WfKdG+++s+ KIAA0992 390 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP---K 433 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< sd++ + d +gt++L + dD G Yt+ A N+ G+ +++ +L V KIAA0992 434 SDHYTIQRDL-DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 481 -* KIAA0992 - - PF07679.6.ls: domain 1 of 3, from 390 to 481: score 77.2, E = 4.7e-20 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P F+ k+k ++ eG +++f+C+V G+P+P++ WfKdG+++s+ KIAA0992 390 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP---K 433 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< sd++ + d +gt++L + dD G Yt+ A N+ G+ +++ +L V KIAA0992 434 SDHYTIQRDL-DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 481 -* KIAA0992 - - PF00047.15.ls: domain 1 of 3, from 404 to 466: score 41.4, E = 2.8e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +vt+tC+v g+p ++++W+++gk++ + ++++ +++ d+t + KIAA0992 404 GMPVTFTCRV--AGNPKPKIYWFKDGKqISpKSDHYTIQRDLDGTCS 448 tsLtitnvtpeDggtYtCvv<-* L+ t+ t +D+g+Yt ++ KIAA0992 449 --LHTTASTLDDDGNYTIMA 466 PF00047.15.fs: domain 1 of 3, from 404 to 463: score 40.0, E = 3.1e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +vt+tC+v g+p ++++W+++gk++ + ++++ +++ d+t + KIAA0992 404 GMPVTFTCRV--AGNPKPKIYWFKDGKqISpKSDHYTIQRDLDGTCS 448 tsLtitnvtpeDggtYt<-* L+ t+ t +D+g+Yt KIAA0992 449 --LHTTASTLDDDGNYT 463 PF07679.6.ls: domain 2 of 3, from 524 to 614: score 134.9, E = 2e-37 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+q p d++VqeG+ +r++CkV+G P+P+ sW dG+p+++ KIAA0992 524 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP---- 566 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++ +k+ +++ +g ++L+I v+++D+G+YtC+AtN+aG+ + s eL V KIAA0992 567 DSAHKMLVRE-NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 614 -* KIAA0992 - - PF07679.6.fs: domain 2 of 3, from 524 to 614: score 133.0, E = 3.5e-38 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+q p d++VqeG+ +r++CkV+G P+P+ sW dG+p+++ KIAA0992 524 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP---- 566 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++ +k+ +++ +g ++L+I v+++D+G+YtC+AtN+aG+ + s eL V KIAA0992 567 DSAHKMLVRE-NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 614 -* KIAA0992 - - PF00047.15.ls: domain 2 of 3, from 538 to 599: score 36.0, E = 1.2e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++ C v +g p ++++W+ +gk++ ++ ++ +++++ + KIAA0992 538 GKLCRMDCKV--SGLPTPDLSWQLDGKpVRpDSAHKMLVRENGVHS- 581 tsLtitnvtpeDggtYtCvv<-* L i +vt+ D+g+YtC + KIAA0992 582 --LIIEPVTSRDAGIYTCIA 599 PF00047.15.fs: domain 2 of 3, from 538 to 599: score 34.1, E = 1.3e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ ++ C v +g p ++++W+ +gk++ ++ ++ +++++ + KIAA0992 538 GKLCRMDCKV--SGLPTPDLSWQLDGKpVRpDSAHKMLVRENGVHS- 581 tsLtitnvtpeDggtYtCvv<-* L i +vt+ D+g+YtC + KIAA0992 582 --LIIEPVTSRDAGIYTCIA 599 PF07679.6.ls: domain 3 of 3, from 623 to 714: score 90.2, E = 6e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+ k+++ V+ G ++r+eC+V G P+P++ W+K ++ l+ + KIAA0992 623 PVFIEKLQNTGVADGYPVRLECRVLGVPPPQIFWKKENESLTH---S 666 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +dr++++ d++++++ L I++++++D+G Yt+ A+N+aG ++++a+L V KIAA0992 667 TDRVSMHQDNHGYIC-LLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 714 -* KIAA0992 - - PF07679.6.fs: domain 3 of 3, from 623 to 714: score 88.2, E = 4.1e-25 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+ k+++ V+ G ++r+eC+V G P+P++ W+K ++ l+ + KIAA0992 623 PVFIEKLQNTGVADGYPVRLECRVLGVPPPQIFWKKENESLTH---S 666 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +dr++++ d++++++ L I++++++D+G Yt+ A+N+aG ++++a+L V KIAA0992 667 TDRVSMHQDNHGYIC-LLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 714 -* KIAA0992 - - PF00047.15.ls: domain 3 of 3, from 637 to 699: score 27.4, E = 4.8e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L C+v g p+++++W++++ +lt++++ s ++++ ++ KIAA0992 637 GYPVRLECRV--LGVPPPQIFWKKENEsLThSTDRVSMHQDNHGYIC 681 tsLtitnvtpeDggtYtCvv<-* L i+ +t+eD+g Yt + KIAA0992 682 --LLIQGATKEDAGWYTVSA 699 PF00047.15.fs: domain 3 of 3, from 637 to 696: score 26.2, E = 1.9e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G +v+L C+v g p+++++W++++ +lt++++ s ++++ ++ KIAA0992 637 GYPVRLECRV--LGVPPPQIFWKKENEsLThSTDRVSMHQDNHGYIC 681 tsLtitnvtpeDggtYt<-* L i+ +t+eD+g Yt KIAA0992 682 --LLIQGATKEDAGWYT 696 //