hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18512346/chunk_1/iprscan-20080502-18512346.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0990 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05679.6.ls Chondroitin N-acetylgalactosaminyltransferas 1134.1 0 1 PF05679.6.fs Chondroitin N-acetylgalactosaminyltransferas 1132.5 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05679.6.fs 1/1 319 858 .. 1 684 [] 1132.5 0 PF05679.6.ls 1/1 319 858 .. 1 684 [] 1134.1 0 Alignments of top-scoring domains: PF05679.6.fs: domain 1 of 1, from 319 to 858: score 1132.5, E = 0 *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle h++kClr+m+t++eDv e+GRCvr+++Gv ++v++yemq+l+ KIAA0990 319 HIGKCLREMYTTHEDV-EVGRCVRRFAGV------QCVWSYEMQQLF 358 lsnseaekesyierlkepafksAltvhPvknpadmyrLHkyflrlelera ++n+e++k++yi++l+++++++A+t+hP+knp+++yrLH+y+l+++++++ KIAA0990 359 YENYEQNKKGYIRDLHNSKIHQAITLHPNKNPPYQYRLHSYMLSRKISEL 408 reeiiqLeaeisrlAeysasegirkisWplgiPpSFmpstPnnRyevltW r+++iqL++ei+++++ys++e i+k++++lgiPpSFm+++P++R+e+l+W KIAA0990 409 RHRTIQLHREIVLMSKYSNTE-IHKEDLQLGIPPSFMRFQPRQREEILEW 457 eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl e++Tg++l+s++Dg ++Pr+++d+a+R++l+D+v+q++e++N+na++r+ KIAA0990 458 EFLTGKYLYSAVDG--QPPRRGMDSAQREALDDIVMQVMEMINANAKTRG 505 RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE R+ ++f+++q+GYRR++P++G++Y+LDLlL KIAA0990 506 RI---------------IDFKEIQYGYRRVNPMYGAEYILDLLL------ 534 mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqiveeevldaqp l+++h+++k++++vrR+ay+++++s++q+ve+e+ldaq+ KIAA0990 535 -----------LYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAQE 573 spyvteatNSGalSFLSNSLKKLVPFqLPGSKseHkePKDKrihvllPLA ++++++++ SG+lSFLSNSLKKLVPFqLPGSKseHkePKDK+i++l+PL KIAA0990 574 LAKRINQE-SGSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKKINILIPL- 621 legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk +gr+d+++rF+++f+k+CL +pn+ +v+L+vll++++++++++ KIAA0990 622 -SGRFDMFVRFMGNFEKTCL-IPNQ--NVKLVVLLFNSDSNPDKA----- 662 avKaeaaELerdyRikslagariawlsVsPALseefsrpvDPqSWLLHAS +++EL++dyRik +++a++++l+Vs +efsr++ KIAA0990 663 ----KQVELMTDYRIK-YPKADMQILPVS----GEFSRAL---------- 693 mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG aL++g++++++ ++Llf++dVd+vftt+FL+RcR+NT+lG KIAA0990 694 --------ALEVGSSQFNN---ESLLFFCDVDLVFTTEFLQRCRANTVLG 732 wQvYFPvvFseYShPaisymEmTEKEEketPteqareaALSslqggklPs +Q+YFP++Fs+Y +P+i+y +gk+Ps KIAA0990 733 QQIYFPIIFSQY-DPKIVY-------------------------SGKVPS 756 egetlgvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIe + ++++++++tG+++++g+g+tc+Yk+D+v+ VgGfd ++I+ KIAA0990 757 D-NHFAFTQKTGFWRNYGFGITCIYKGDLVR---------VGGFD-VSIQ 795 GWGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLv GWGlEdvDLf+k++++G l+++R++E+g+v KIAA0990 796 GWGLEDVDLFNKVVQAG---------------------LKTFRSQEVGVV 824 FGhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-* h++hp++Cdpn Ld++qy++Cl+Ska++++S++QL KIAA0990 825 --HVHHPVFCDPN-LDPKQYKMCLGSKASTYGSTQQL 858 PF05679.6.ls: domain 1 of 1, from 319 to 858: score 1134.1, E = 0 *->hlekClrdmltadeDvlelGRCvrdatGvgClgthegvqyyemqsle h++kClr+m+t++eDv e+GRCvr+++Gv ++v++yemq+l+ KIAA0990 319 HIGKCLREMYTTHEDV-EVGRCVRRFAGV------QCVWSYEMQQLF 358 lsnseaekesyierlkepafksAltvhPvknpadmyrLHkyflrlelera ++n+e++k++yi++l+++++++A+t+hP+knp+++yrLH+y+l+++++++ KIAA0990 359 YENYEQNKKGYIRDLHNSKIHQAITLHPNKNPPYQYRLHSYMLSRKISEL 408 reeiiqLeaeisrlAeysasegirkisWplgiPpSFmpstPnnRyevltW r+++iqL++ei+++++ys++e i+k++++lgiPpSFm+++P++R+e+l+W KIAA0990 409 RHRTIQLHREIVLMSKYSNTE-IHKEDLQLGIPPSFMRFQPRQREEILEW 457 eyfTgthlfscaDgLakePretldgaeRaDlaDvveqaLeelNrnasprl e++Tg++l+s++Dg ++Pr+++d+a+R++l+D+v+q++e++N+na++r+ KIAA0990 458 EFLTGKYLYSAVDG--QPPRRGMDSAQREALDDIVMQVMEMINANAKTRG 505 RvKGAGSAAAYASDViKLqfqsLqnGYRRfdPtrGmdYtLDLlLRKTVNE R+ ++f+++q+GYRR++P++G++Y+LDLlL KIAA0990 506 RI---------------IDFKEIQYGYRRVNPMYGAEYILDLLL------ 534 mPEVDNRFESdleaahpegkrrilvrRrayVlrplsrvqiveeevldaqp l+++h+++k++++vrR+ay+++++s++q+ve+e+ldaq+ KIAA0990 535 -----------LYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAQE 573 spyvteatNSGalSFLSNSLKKLVPFqLPGSKseHkePKDKrihvllPLA ++++++++ SG+lSFLSNSLKKLVPFqLPGSKseHkePKDK+i++l+PL KIAA0990 574 LAKRINQE-SGSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKKINILIPL- 621 legrvdsalrFleafaklCLFepneDravlLlvllYgleeerkvreDpFk +gr+d+++rF+++f+k+CL +pn+ +v+L+vll++++++++++ KIAA0990 622 -SGRFDMFVRFMGNFEKTCL-IPNQ--NVKLVVLLFNSDSNPDKA----- 662 avKaeaaELerdyRikslagariawlsVsPALseefsrpvDPqSWLLHAS +++EL++dyRik +++a++++l+Vs +efsr++ KIAA0990 663 ----KQVELMTDYRIK-YPKADMQILPVS----GEFSRAL---------- 693 mYGPRqLLaLrlgdealpkhgldtLlfLadVdmvfttdFLnRcRmNTIlG aL++g++++++ ++Llf++dVd+vftt+FL+RcR+NT+lG KIAA0990 694 --------ALEVGSSQFNN---ESLLFFCDVDLVFTTEFLQRCRANTVLG 732 wQvYFPvvFseYShPaisymEmTEKEEketPteqareaALSslqggklPs +Q+YFP++Fs+Y +P+i+y +gk+Ps KIAA0990 733 QQIYFPIIFSQY-DPKIVY-------------------------SGKVPS 756 egetlgvsrdtGrFdrqgygetcfYksDyvaARarLaqqeVgGfdEeeIe + ++++++++tG+++++g+g+tc+Yk+D+v+ VgGfd ++I+ KIAA0990 757 D-NHFAFTQKTGFWRNYGFGITCIYKGDLVR---------VGGFD-VSIQ 795 GWGlEdvDLfekflrfGEETRPPGVESiLDmFVAAqsslhvlRavEPgLv GWGlEdvDLf+k++++G l+++R++E+g+v KIAA0990 796 GWGLEDVDLFNKVVQAG---------------------LKTFRSQEVGVV 824 FGhryhprlCdpnsLdteqyhrClrSkaenlASrdQL<-* h++hp++Cdpn Ld++qy++Cl+Ska++++S++QL KIAA0990 825 --HVHHPVFCDPN-LDPKQYKMCLGSKASTYGSTQQL 858 //