hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18430197/chunk_1/iprscan-20080502-18430197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0985 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 169.5 3.4e-46 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/2 411 516 .. 1 92 [] 89.7 3.6e-22 SM00239 2/2 569 683 .. 1 92 [] 79.8 3.3e-19 Alignments of top-scoring domains: SM00239: domain 1 of 2, from 411 to 516: score 89.7, E = 3.6e-22 *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt +L ++ii+A++L++ ++++ DPYVk++ ++ +++++ +Tk+ ++t KIAA0985 411 SLQCTIIKAKGLKpmdsnglaDPYVKLHllpgasksnklRTKTLRNT 457 lsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvt NP+WnE t++++ + +++ ++++L+i+V+D+++ ++++fiG+++ KIAA0985 458 R---NPIWNE---TLVYHGITdedmqrKtLRISVCDEdkfghnEFIGETR 501 ippnnahqhsadglihlsell.ggrh.kl<-* ++ l++l++++r++ + KIAA0985 502 FS--------------LKKLKpNQRKnFN 516 SM00239: domain 2 of 2, from 569 to 683: score 79.8, E = 3.3e-19 *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt L v ii++ +L + ++ +DP+Vk++ +++ +++ ++kT ++kkt KIAA0985 569 GLIVGIIRCVHLAamdangysDPFVKLWlkpdmgkkakhKTQIKKKT 615 lsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvti l NP++nE +F++++ +++ +++L i+V+D++ ++++d iG +++ KIAA0985 616 L---NPEFNE---EFFYDIKHsdlakKsLDISVWDYdigksnDYIGGCQL 659 ppnnahqhsadg..lihlsell.ggrh.kl<-* + +sa g++l h+ e l++ ++ + KIAA0985 660 G------ISAKGerLKHWYECLkNKDKkIE 683 //