# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj07670.fasta.huge -Q ../query/KIAA0984.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0984, 728 aa
 vs ./tmplib.23663 library

1986777 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.2483+/-0.0066; mu= 4.4934+/- 0.449
 mean_var=172.7409+/-41.175, 0's: 0 Z-trim: 8  B-trim: 0 in 0/40
 Lambda= 0.097584

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1055  ( 868 res)   hh09512                     ( 868)  257 48.7 2.7e-06


>>KIAA1055  ( 868 res)   hh09512                          (868 aa)
 initn: 370 init1: 122 opt: 257  Z-score: 204.8  bits: 48.7 E(): 2.7e-06
Smith-Waterman score: 356;  28.517% identity (61.597% similar) in 263 aa overlap (44-302:609-851)

            20        30        40        50        60        70   
KIAA09 RTVCSGVDTKLKFTLEPSLGQNGFQQWYDALKAVARLSTGIPKEWRRKVWLTLADHYLHS
                                     :: . :  .:::.: : :::   .:.. ..
KIAA10 LTENQEVSTGVKWENYFASTVNREMMCSPELKNLIR--AGIPHEHRSKVWKWCVDRHTRK
      580       590       600       610         620       630      

                80        90       100       110       120         
KIAA09 IAIDWD----KTMRFTFNERSNPDDDSMGIQIVKDLHRTGCSSYCGQEAEQDRVVLKRVL
       .  . .    .:.     :..:: . .. ..... :  .   :   .:. :    :. ::
KIAA10 FKDNTEPGHFQTLLQKALEKQNPASKQIELDLLRTLPNNKHYSCPTSEGIQK---LRNVL
        640       650       660       670       680          690   

     130       140       150       160       170       180         
KIAA09 LAYARWNKTVGYCQGFNILAALILEVMEGNEGDALKIMIYLIDKVLPESYFVNNLRALSV
       ::..  :  .:::::.: :.:. :  .:  . ::.  .. ...  .:..:....: . .:
KIAA10 LAFSWRNPDIGYCQGLNRLVAVALLYLE--QEDAFWCLVTIVEVFMPRDYYTKTLLGSQV
           700       710       720         730       740       750 

     190       200       210       220       230       240         
KIAA09 DMAVFRDLLRMKLPELSQHLDTLQRTANKESGGGYEPPLTNVFTMQWFLTLFATCLPNQT
       :. :::::.  :::.:  :..             :.   : ..:..:::..:.  . .. 
KIAA10 DQRVFRDLMSEKLPRLHGHFEQ------------YKVDYT-LITFNWFLVVFVDSVVSDI
             760       770                    780       790        

     250       260       270       280       290       300         
KIAA09 VLKIWDSVFFEGSEIILRVSLAIWAKLGEQIECCETADEFYSTMGRLTQEMLENDLLQSH
       ..::::: ..:: ..:.: .::..    :.:   . .  ... .  .:. .:.       
KIAA10 LFKIWDSFLYEGPKVIFRFALALFKYKEEEILKLQDSMSIFKYLRYFTRTILDARSGTDA
      800       810       820       830       840       850        

     310       320       330       340       350       360         
KIAA09 ELMQTVYSMAPFPFPQLAELREKYTYNITPFPATVKPTSVSGRHSKARDSDEENDPDDED
                                                                   
KIAA10 PTTWRKSGWS                                                  
      860                                                          




728 residues in 1 query   sequences
1986777 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:09 2008 done: Thu Dec 18 15:24:10 2008
 Total Scan time:  0.550 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]