hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18230723/chunk_1/iprscan-20080502-18230723.nocrc
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Query sequence: KIAA0973
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 338.8    3.7e-97   1
SM00228                                                  62.5    5.5e-14   1
SM00219                                                 -42.2    1.6e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     387   660 ..     1   280 []   -42.2  1.6e-08
SM00220    1/1     387   660 ..     1   231 []   338.8  3.7e-97
SM00228    1/1     988  1068 ..     1    80 []    62.5  5.5e-14

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 387 to 660: score -42.2, E = 1.6e-08
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                         +k + +Ga+G Vy+ + +++++  A K++++     +++++   
    KIAA0973   387    FDTIKLISNGAYGAVYLVRHRdtrQRFAMKKINKQNlilrnqIQQAF 433  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                    E  i++    ++p +V ++    +          l++vmEy+egGd+  
    KIAA0973   434 VERDILTFA--ENPFVVGMFCSFETR-------RHLCMVMEYVEGGDCAT 474  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                    L++ +  l+++    +        eYL+  ++vHRDL   N L+++ ++
    KIAA0973   475 LLKNIGA-LPVEMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGH 523  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktll......PirWmAP
                   +K +DFGLs+ +         +  Y    +k+++  l+++  +     AP
    KIAA0973   524 IKLTDFGLSKMGLMS----LTTNLYEGHIEKDAREFLdkqvcgTPEYIAP 569  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E++    +    D W+ G+ L+E +  + +   +      ++ee++ ++ 
    KIAA0973   570 EVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD------TPEELFGQVI 613  

                   kGyRlpkPendlp.iSsvtCPdelYdlMlqCWaedPedRPtFsel.....
                   + + l +  +  + +     P+e   l+++  + +P  R       + ++
    KIAA0973   614 SDDILWPEGD--EaL-----PTEAQLLISSLLQTNPLVRLGAGGAfevkq 656  

                   verl<-*
                   ++++   
    KIAA0973   657 HSFF    660  

SM00220: domain 1 of 1, from 387 to 660: score 338.8, E = 3.7e-97
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      ++ +k++  Ga+G Vyl+r+++t +++A+K+i++++   +++ +++ 
    KIAA0973   387    FDTIKLISNGAYGAVYLVRHRDTRQRFAMKKINkqnlilrnqiQQAF 433  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                    E++iL     P++V ++ +fe++ +l++VmEy+eG  Gd  +llk+ g 
    KIAA0973   434 VERDILTFaENPFVVGMFCSFETrRHLCMVMEYVEG--GDCATLLKNIGA 481  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l+ ++ar yf+++++aLeYLH+ gI+HRDLKP+N+L++s +h+K
    KIAA0973   482 ------LPVeMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSmgHIK 525  

                   laDFGlArql......................ttfvGTpeYmAPEvl...
                   l+DFGl++    + +++  +++ +++ ++  ++ ++GTpeY+APEv+ ++
    KIAA0973   526 LTDFGLSKMGlmslttnlyeghiekdarefldKQVCGTPEYIAPEVIlrq 575  

                   gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig...........
                   gYgk +vD+W+ G+ilyE+l+G+ PF +++++++f ++ +++  ++++++
    KIAA0973   576 GYGK-PVDWWAMGIILYEFLVGCVPFFgdTPEELFGQVIsddilwpegde 624  

                   ..SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                     + ea  Li+ lL+ +P  Rl+a+ a+e    +k+H ff   
    KIAA0973   625 alPTEAQLLISSLLQTNPLVRLGAgGAFE----VKQHSFF    660  

SM00228: domain 1 of 1, from 988 to 1068: score 62.5, E = 5.5e-14
                   *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk
                      + +Gf+++  +   ++++  + +++v +v++G+pA  aG      L+
    KIAA0973   988    KKYGFTLRAirvymgdtdvysvHHIVWHVEEGGPAQEAG------LC 1028 

                   vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +GD I+ VNG ++v g+ h e+v+l+ k+g+     kv +t  + +   
    KIAA0973  1029 AGDLITHVNG-EPVHGMVHPEVVELILKSGN-----KVAVTTTPFE    1068 

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