hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18194341/chunk_1/iprscan-20080502-18194341.nocrc
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Query sequence: KIAA0971
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06743.5.ls FAST kinase-like protein, subdomain 1          111.9    1.7e-30   1
PF08368.2.fs FAST kinase-like protein, subdomain 2          104.4    3.1e-30   1
PF06743.5.fs FAST kinase-like protein, subdomain 1          109.9    6.8e-30   1
PF08368.2.ls FAST kinase-like protein, subdomain 2          106.3    8.6e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06743.5.fs   1/1     473   545 ..     1    75 []   109.9  6.8e-30
PF06743.5.ls   1/1     473   545 ..     1    75 []   111.9  1.7e-30
PF08368.2.fs   1/1     552   636 ..     1    95 []   104.4  3.1e-30
PF08368.2.ls   1/1     552   636 ..     1    95 []   106.3  8.6e-29

Alignments of top-scoring domains:
PF06743.5.fs: domain 1 of 1, from 473 to 545: score 109.9, E = 6.8e-30
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      ++++L+++++LN++yk++nke+F ++++++L+++Lht+s  +e+ll+
    KIAA0971   473    ILSILHTYSSLNHVYKCQNKEQFVEVMASALTGYLHTIS--SENLLD 517  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   +v+S+cl++yfP++++n++l++d++++L   
    KIAA0971   518 AVYSFCLMNYFPLAPFNQLLQKDIISEL    545  

PF06743.5.ls: domain 1 of 1, from 473 to 545: score 111.9, E = 1.7e-30
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      ++++L+++++LN++yk++nke+F ++++++L+++Lht+s  +e+ll+
    KIAA0971   473    ILSILHTYSSLNHVYKCQNKEQFVEVMASALTGYLHTIS--SENLLD 517  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   +v+S+cl++yfP++++n++l++d++++L   
    KIAA0971   518 AVYSFCLMNYFPLAPFNQLLQKDIISEL    545  

PF08368.2.fs: domain 1 of 1, from 552 to 636: score 104.4, E = 3.1e-30
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      ++ +kL++L++++kL+ + Y  ++ ++  q p++++ +++       
    KIAA0971   552    KNAYKLHTLDTCLKLDDTVYLRDIALSLPQLPRELPSSHT------- 591  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkp.LP<
                     + +++ev  L++LLGge++f+++v++P++y+iDfE+++D+n+++ LP 
    KIAA0971   592 --NAKVAEV--LSSLLGGEGHFSKDVHLPHNYHIDFEIRMDTNRNQvLP  636  

                   -*
                     
    KIAA0971     -    -    

PF08368.2.ls: domain 1 of 1, from 552 to 636: score 106.3, E = 8.6e-29
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      ++ +kL++L++++kL+ + Y  ++ ++  q p++++ +++       
    KIAA0971   552    KNAYKLHTLDTCLKLDDTVYLRDIALSLPQLPRELPSSHT------- 591  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkp.LP<
                     + +++ev  L++LLGge++f+++v++P++y+iDfE+++D+n+++ LP 
    KIAA0971   592 --NAKVAEV--LSSLLGGEGHFSKDVHLPHNYHIDFEIRMDTNRNQvLP  636  

                   -*
                     
    KIAA0971     -    -    

//