hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18180365/chunk_1/iprscan-20080502-18180365.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0970 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00060 332.5 2.9e-95 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00060 1/9 219 311 .. 1 69 [] 34.9 1.1e-05 SM00060 2/9 324 405 .. 1 69 [] 43.4 3.1e-08 SM00060 3/9 420 502 .. 1 69 [] 45.2 8.5e-09 SM00060 4/9 517 600 .. 1 69 [] 35.3 8.5e-06 SM00060 5/9 615 697 .. 1 69 [] 42.1 7.4e-08 SM00060 6/9 712 791 .. 1 69 [] 44.7 1.2e-08 SM00060 7/9 817 890 .. 1 69 [] 38.8 7.3e-07 SM00060 8/9 904 985 .. 1 69 [] 32.8 4.7e-05 SM00060 9/9 1000 1080 .. 1 69 [] 15.3 3.7 Alignments of top-scoring domains: SM00060: domain 1 of 9, from 219 to 311: score 34.9, E = 1.1e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.............. + ++++d+ ++ +v+l+W+pP++ +++ ++++ + KIAA0970 219 LSNIVK---PVASDIQAR------TVVLTWSPPsslingetdessvp 256 .ivgYr......................ytltgLkPgaepwteYefrVrA + gY++ ++++++++ +++ ++++++ tl +LkP Y+ +V+A KIAA0970 257 eLYGYEvlisstgkdgkyksvyvgeetnITLNDLKPA----MDYHAKVQA 302 vngndaGeg<-* ++ + +G KIAA0970 303 EYNSIKGTP 311 SM00060: domain 2 of 9, from 324 to 405: score 43.4, E = 3.1e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P+ P +r+ + t++ s+tl+W++P++++++i +++ ++ KIAA0970 324 PDIPNP---PRIANRTKN------SLTLQWKAPsdngskIQNFVlew 361 ...................ytltgLkPgaepwteYefrVrAvngndaGeg ++++++++ + ++++++++t L+P +fr++A+n+ +G + KIAA0970 362 degkgngefcqcymgsqkqFKITKLSPA----MGCKFRLSARND--YGTS 405 <-* KIAA0970 - - SM00060: domain 3 of 9, from 420 to 502: score 45.2, E = 8.5e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg P+ P +++t + t ++l+W++P++ +++++ ++i++ KIAA0970 420 PSMPAS---PVLTKAGIT------WLSLQWSKPsgtpsdegisyILE 457 Yr..................ytltgLkPgaepwteYefrVrAvngndaGe ++++++ + +++ ++++ yt+++L+ t+Y+f+V+A+n+ G KIAA0970 458 MEeetsgygfkpkydgedlaYTVKNLRRS----TKYKFKVIAYNS--EGK 501 g<-* + KIAA0970 502 S 502 SM00060: domain 4 of 9, from 517 to 600: score 35.3, E = 8.5e-06 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. Pg P ++v+ + +s+ ++W+pP+++++ i Y+++ KIAA0970 517 PGIPVK---PSVKGKIHS-----HSFKITWDPPkdnggatINKYVve 555 ....................ytltgLkPgaepwteYefrVrAvngndaGe +++++++++ ++ ++++ + L Pg Y+ rV+++++ +G+ KIAA0970 556 maegsngnkwemiysgatreHLCDRLNPG----CFYRLRVYCISD--GGQ 599 g<-* + KIAA0970 600 S 600 SM00060: domain 5 of 9, from 615 to 697: score 42.1, E = 7.4e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. Pgp +r+ + ++l+W pP +++++i Y+++ KIAA0970 615 PGPCLP---PRLQGRPKAK-----EIQLRWGPPlvdggspISCYSve 653 ...................ytltgLkPgaepwteYefrVrAvngndaGeg ++ ++++++++ +++++++t++ L Pg ++Y+fr+rA n+ G g KIAA0970 654 mspiekdeprevyqgseveCTVSSLLPG----KTYSFRLRAANK--MGFG 697 <-* KIAA0970 - - SM00060: domain 6 of 9, from 712 to 791: score 44.7, E = 1.2e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P+ + ++vt ++t +++ We P +++ ++++Yr ++ KIAA0970 712 PDQCKP---PQVTCRSAT------CAQVNWEVPlsngtdVTEYRlew 749 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- ++++++ + +++ +y ++gL+P t+Y rV+A + +G g KIAA0970 750 ggvegsmqicycgpglsYEIKGLSPA----TTYYCRVQALSV--VGAG 791 * KIAA0970 - - SM00060: domain 7 of 9, from 817 to 890: score 38.8, E = 7.3e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... + +n ++ + st + +sWe+P +++++i+ Y+ + KIAA0970 817 DDEIEN---PHYS--PST------CLAISWEKPcdhgseILAYSidf 852 .............ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++++ +++++++y++ +L+P+ t+Y++r++A n+ G g KIAA0970 853 gdkqsltvgkvtsYIINNLQPD----TTYRIRIQALNS--LGAG 890 SM00060: domain 8 of 9, from 904 to 985: score 32.8, E = 4.7e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr. P+ P++ l+ ++ + + l+W + ++ + + ++Y+ KIAA0970 904 PPDPPR---LECVAFSHQ------NLKLKWGEGtpktlstdSIQYHl 941 ...................ytltgLkPgaepwteYefrVrAvngndaGeg + ++++++ ++ +++ +y++ L + t Y+f ++A n+ aGeg KIAA0970 942 qmedkngrfvslyrgpchtYKVQRLNES----TSYKFCIQACNE--AGEG 985 <-* KIAA0970 - - SM00060: domain 9 of 9, from 1000 to 1080: score 15.3, E = 3.7 *->PgpPsnptelrvtdvtststsdltsvtlsWe..pP....ivgYr... P + + ++++ v+++ ++++We P +++ v Y+ ++ KIAA0970 1000 PAALKA---PKIEKVNDH------ICEITWEclQPmkgdPVIYSlqv 1037 ..................ytltgLkPgaepwteYefrVrAvngndaGeg< +++++ ++ ++++++++ + L+ + eY+frV A+ + KIAA0970 1038 mlgkdsefkqiykgpdssFRYSSLQLN----CEYRFRVCAIRQ--CQDS 1080 -* KIAA0970 - - //