hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18180365/chunk_1/iprscan-20080502-18180365.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0970 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 281.0 2.1e-81 8 PF00041.11.fs Fibronectin type III domain 272.7 7e-79 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00041.11.fs 1/8 219 312 .. 1 84 [] 27.5 2.9e-07 PF00041.11.ls 1/8 219 312 .. 1 84 [] 29.5 1.1e-05 PF00041.11.ls 2/8 324 408 .. 1 84 [] 36.1 1.2e-07 PF00041.11.fs 2/8 324 408 .. 1 84 [] 34.1 3.8e-09 PF00041.11.ls 3/8 420 505 .. 1 84 [] 36.1 1.1e-07 PF00041.11.fs 3/8 420 505 .. 1 84 [] 34.1 3.7e-09 PF00041.11.ls 4/8 517 603 .. 1 84 [] 28.5 2.1e-05 PF00041.11.fs 4/8 517 603 .. 1 84 [] 26.5 5.5e-07 PF00041.11.ls 5/8 614 700 .. 1 84 [] 43.8 5.5e-10 PF00041.11.fs 5/8 614 700 .. 1 84 [] 41.8 2.3e-11 PF00041.11.ls 6/8 712 794 .. 1 84 [] 43.2 8.3e-10 PF00041.11.fs 6/8 712 794 .. 1 84 [] 41.2 3.4e-11 PF00041.11.ls 7/8 816 893 .. 1 84 [] 43.6 6.2e-10 PF00041.11.fs 7/8 831 893 .. 17 84 .] 45.1 2.6e-12 PF00041.11.ls 8/8 905 988 .. 1 84 [] 20.2 0.0014 PF00041.11.fs 8/8 959 988 .. 56 84 .] 22.4 8.7e-06 Alignments of top-scoring domains: PF00041.11.fs: domain 1 of 8, from 219 to 312: score 27.5, E = 2.9e-07 *->PsaPtnltvtdvtstsltlsWspPt..........gngpitgYevty +s + ++d+++ +++l+WspP++ +++++++ ++ gYev KIAA0970 219 LSNIVKPVASDIQARTVVLTWSPPSslingetdesSVPELYGYEVLI 265 RqpknggewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<- +++++ ++ g +t tl++LkP ++Y+ +VqA + +G +S KIAA0970 266 -SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIkGTPS 312 * KIAA0970 - - PF00041.11.ls: domain 1 of 8, from 219 to 312: score 29.5, E = 1.1e-05 *->PsaPtnltvtdvtstsltlsWspPt..........gngpitgYevty +s + ++d+++ +++l+WspP++ +++++++ ++ gYev KIAA0970 219 LSNIVKPVASDIQARTVVLTWSPPSslingetdesSVPELYGYEVLI 265 RqpknggewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<- +++++ ++ g +t tl++LkP ++Y+ +VqA + +G +S KIAA0970 266 -SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIkGTPS 312 * KIAA0970 - - PF00041.11.ls: domain 2 of 8, from 324 to 408: score 36.1, E = 1.2e-07 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P+ P +++ ++t +sltl+W++P++++++i+++ +++ + g+++ KIAA0970 324 PDIPNPPRIANRTKNSLTLQWKAPSdNGSKIQNFVLEW-DEGKGNGe 369 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++ + + + +t L P + ++r+ A+n+ G++++S KIAA0970 370 fCQCYMGSQKQ--FKITKLSPAMGCKFRLSARNDYGtSGFS 408 PF00041.11.fs: domain 2 of 8, from 324 to 408: score 34.1, E = 3.8e-09 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge. P+ P +++ ++t +sltl+W++P++++++i+++ +++ + g+++ KIAA0970 324 PDIPNPPRIANRTKNSLTLQWKAPSdNGSKIQNFVLEW-DEGKGNGe 369 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ ++ + + + +t L P + ++r+ A+n+ G++++S KIAA0970 370 fCQCYMGSQKQ--FKITKLSPAMGCKFRLSARNDYGtSGFS 408 PF00041.11.ls: domain 3 of 8, from 420 to 505: score 36.1, E = 1.1e-07 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps P + t + t l+l+Ws+P+++++ + +Y ++ ++++g + KIAA0970 420 PSMPASPVLTKAGITWLSLQWSKPSgtPSDEGISYILEMEEETSGYG 466 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* k + + yt+++L+ t+Y+++V+A+n +G++ +S KIAA0970 467 FKPKYDGEDL-AYTVKNLRRSTKYKFKVIAYNSEGkSNPS 505 PF00041.11.fs: domain 3 of 8, from 420 to 505: score 34.1, E = 3.7e-09 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps P + t + t l+l+Ws+P+++++ + +Y ++ ++++g + KIAA0970 420 PSMPASPVLTKAGITWLSLQWSKPSgtPSDEGISYILEMEEETSGYG 466 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* k + + yt+++L+ t+Y+++V+A+n +G++ +S KIAA0970 467 FKPKYDGEDL-AYTVKNLRRSTKYKFKVIAYNSEGkSNPS 505 PF00041.11.ls: domain 4 of 8, from 517 to 603: score 28.5, E = 2.1e-05 *->PsaPtnltvtdv.tstsltlsWspPt..gngpitgYevtyRqpkngg P+ P ++v++ s s+ ++W+pP+++g+++i +Y v+ + ++g KIAA0970 517 PGIPVKPSVKGKiHSHSFKITWDPPKdnGGATINKYVVEM-AEGSNG 562 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + e + +g t+++ L+Pg Y +rV+ +++gG+++ S KIAA0970 563 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGqSAVS 603 PF00041.11.fs: domain 4 of 8, from 517 to 603: score 26.5, E = 5.5e-07 *->PsaPtnltvtdv.tstsltlsWspPt..gngpitgYevtyRqpkngg P+ P ++v++ s s+ ++W+pP+++g+++i +Y v+ + ++g KIAA0970 517 PGIPVKPSVKGKiHSHSFKITWDPPKdnGGATINKYVVEM-AEGSNG 562 ewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + e + +g t+++ L+Pg Y +rV+ +++gG+++ S KIAA0970 563 NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGqSAVS 603 PF00041.11.ls: domain 5 of 8, from 614 to 700: score 43.8, E = 5.5e-10 *->PsaP.tnltvtdv.tstsltlsWspPt..gngpitgYevtyRqpkng P+ P ++ +++ + +++l+W pP +g++pi+ Y+v+ +p + KIAA0970 614 PPGPcLPPRLQGRpKAKEIQLRWGPPLvdGGSPISCYSVEM-SPIEK 659 gewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e++e+ + ++t++ L Pg +Y++r++A n G Gp+S KIAA0970 660 DEPREVYQGSEV-ECTVSSLLPGKTYSFRLRAANKMGfGPFS 700 PF00041.11.fs: domain 5 of 8, from 614 to 700: score 41.8, E = 2.3e-11 *->PsaP.tnltvtdv.tstsltlsWspPt..gngpitgYevtyRqpkng P+ P ++ +++ + +++l+W pP +g++pi+ Y+v+ +p + KIAA0970 614 PPGPcLPPRLQGRpKAKEIQLRWGPPLvdGGSPISCYSVEM-SPIEK 659 gewkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e++e+ + ++t++ L Pg +Y++r++A n G Gp+S KIAA0970 660 DEPREVYQGSEV-ECTVSSLLPGKTYSFRLRAANKMGfGPFS 700 PF00041.11.ls: domain 6 of 8, from 712 to 794: score 43.2, E = 8.3e-10 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++ + ++vt +++t ++++W+ P +++ ++t Y++++ + +g+ KIAA0970 712 PDQCKPPQVTCRSATCAQVNWEVPLsNGTDVTEYRLEW-GGV-EGSM 756 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + + sy+++gL P t+Y rVqA++ +G Gp+S KIAA0970 757 QICYCGPGL-SYEIKGLSPATTYYCRVQALSVVGaGPFS 794 PF00041.11.fs: domain 6 of 8, from 712 to 794: score 41.2, E = 3.4e-11 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++ + ++vt +++t ++++W+ P +++ ++t Y++++ + +g+ KIAA0970 712 PDQCKPPQVTCRSATCAQVNWEVPLsNGTDVTEYRLEW-GGV-EGSM 756 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + + sy+++gL P t+Y rVqA++ +G Gp+S KIAA0970 757 QICYCGPGL-SYEIKGLSPATTYYCRVQALSVVGaGPFS 794 PF00041.11.ls: domain 7 of 8, from 816 to 893: score 43.6, E = 6.2e-10 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge +++ +n++ ++ st l +sW++P + +++i Y+++ +k KIAA0970 816 SdDEIENPHYSP--STCLAISWEKPCdHGSEILAYSIDF-GDK---- 855 wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ltv ++t sy++++L+P+t+Y +r+qA+n G Gp+S KIAA0970 856 -QSLTVGKVT-SYIINNLQPDTTYRIRIQALNSLGaGPFS 893 PF00041.11.fs: domain 7 of 8, from 831 to 893: score 45.1, E = 2.6e-12 *->ltlsWspPt.gngpitgYevtyRqpknggewkeltvpgtttsytltg l +sW++P + +++i Y+++ +k ++ltv ++t sy++++ KIAA0970 831 LAISWEKPCdHGSEILAYSIDF-GDK-----QSLTVGKVT-SYIINN 870 LkPgteYtvrVqAvnggG.GpeS<-* L+P+t+Y +r+qA+n G Gp+S KIAA0970 871 LQPDTTYRIRIQALNSLGaGPFS 893 PF00041.11.ls: domain 8 of 8, from 905 to 988: score 20.2, E = 0.0014 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyR.qpknggew P++P+ v + l l W t +++ +++y+ q++++++ KIAA0970 905 PDPPRLECVAF-SHQNLKLKWGEGT-PKTLSTDSIQYHlQMEDKNGR 949 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* + g+ ++y ++ L++ t Y++++qA n++G+Gp S KIAA0970 950 FVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGeGPLS 988 PF00041.11.fs: domain 8 of 8, from 959 to 988: score 22.4, E = 8.7e-06 *->tsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++y ++ L++ t Y++++qA n++G+Gp S KIAA0970 959 HTYKVQRLNESTSYKFCIQACNEAGeGPLS 988 //