hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18093269/chunk_1/iprscan-20080502-18093269.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0965 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 350.1 1.5e-100 1 SM00219 -48.7 4e-08 1 SM00133 23.8 0.0078 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 115 402 .. 1 280 [] -48.7 4e-08 SM00220 1/1 115 408 .. 1 231 [] 350.1 1.5e-100 SM00133 1/1 409 470 .. 1 79 [] 23.8 0.0078 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 115 to 402: score -48.7, E = 4e-08 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl + +k++G+GaFGeV++ + k+++ A K L+++ ++++++ ++ KIAA0965 115 FESLKVIGRGAFGEVRLVQKKdtgHIYAMKILRKSDmlekeqVAHIR 161 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld E i+ + + +Vk++ ++ l+++mE+ +gGd KIAA0965 162 AERDILVEA--DGAWVVKMFYSFQDK-------RNLYLIMEFLPGGDMMT 202 yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv L k+ l+ ++ + + +++ +f+HRD+ N L++++++ KIAA0965 203 LLMKKDT-LTEEETQFYISETVLAIDAIHQLGFIHRDIKPDNLLLDAKGH 251 vKIsDFGLsRdlyddDkkG..................eskdyYrkkggkg vK sDFGL+ l+ ++ + ++ +++++++ + ++ +++ + + +k+ KIAA0965 252 VKLSDFGLCTGLKKA-HRTefyrnlthnppsdfsfqnMNSKRKAETWKKN 300 gktllPir......WmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPY ++ l + + ++++ APE+++ ++ D WS GV ++E++ G +P KIAA0965 301 RRQ-LAYStvgtpdYIAPEVFMQTGYNKLCDWWSLGVIMYEML-IGYPPF 348 pgeiqqfmsneevleylkk.GyRlpkPendlpiSsvtCPdelYdlMlqCW +++e ++++++ + l P++ v +++ dl+l+ + KIAA0965 349 CS-----ETPQETYRKVMNwKETLVFPPE------VPISEKAKDLILRFC 387 aedPedRPtFsel....verl<-* e+R +++++ve++ KIAA0965 388 ID-SENR-----IgnsgVEEI 402 SM00220: domain 1 of 1, from 115 to 408: score 350.1, E = 1.5e-100 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril +e lk++G+GaFG+V+l+++k+tg+++A+K++++++ ++++ +i+ KIAA0965 115 FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRksdmlekeqvAHIR 161 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr E++iL + d ++Vk++++f+d+ +lyl+mE+++G Gd+++ll k+ + KIAA0965 162 AERDILVEaDGAWVVKMFYSFQDkRNLYLIMEFLPG--GDMMTLLMKKDT 209 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK l+E+e++fy+ ++++a++ +H++g+iHRD+KP+N+LLd ++hvK KIAA0965 210 ------LTEeETQFYISETVLAIDAIHQLGFIHRDIKPDNLLLDAkgHVK 253 laDFGlArql........................................ l+DFGl++ l++ ++++ ++ +++++++ + ++ +++++ ++ ++++++ KIAA0965 254 LSDFGLCTGLkkahrtefyrnlthnppsdfsfqnmnskrkaetwkknrrq 303 ..ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyElltGkpPFp..q ++ vGTp+Y+APEv+ ++gY+k +D+WSlG+i+yE+l G+pPF++++ KIAA0965 304 laYSTVGTPDYIAPEVFmqtGYNK-LCDWWSLGVIMYEMLIGYPPFCseT 352 ldlifkkig..............SpeakdLikklLvkdPekRlta.eaLe ++++++k+++++++ +++ + S+ akdLi + + d e+R++ + + e KIAA0965 353 PQETYRKVMnwketlvfppevpiSEKAKDLILRFCI-DSENRIGNsGVEE 401 deldikaHPff<-* ik HPff KIAA0965 402 ----IKGHPFF 408 SM00133: domain 1 of 1, from 409 to 470: score 23.8, E = 0.0078 *->rgiDWdkLenekkeiePPFkPkikeVyAsptDtsNFDkeFteetpvl g+DW++++ + P+ +ik s DtsNFD +F+e ++ l KIAA0965 409 EGVDWEHIRE--RPAAIPI--EIK----SIDDTSNFD-DFPE-SDIL 445 tpvdsalsnsiqqee.aeteippdpFrGFsyvf<-* +pv+ + + ++ + F++++y++ KIAA0965 446 QPVPNTTEPDYKSKDwV--------FLNYTYKR 470 //