hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18024638/chunk_1/iprscan-20080502-18024638.nocrc
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Query sequence: KIAA0961
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 326.6    1.7e-93  13
SM00349                                                 143.0    3.2e-38   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00349      1/1      17    78 ..     1    62 []   143.0  3.2e-38
SM00355      1/13    169   191 ..     1    23 []    25.4   0.0077
SM00355      2/13    197   219 ..     1    23 []    25.2    0.009
SM00355      3/13    225   247 ..     1    23 []    26.0   0.0051
SM00355      4/13    253   275 ..     1    23 []    30.4  0.00025
SM00355      5/13    281   301 ..     1    23 []    16.0        5
SM00355      6/13    309   331 ..     1    23 []    18.9     0.74
SM00355      7/13    337   359 ..     1    23 []    29.1  0.00062
SM00355      8/13    365   387 ..     1    23 []    26.7   0.0031
SM00355      9/13    393   415 ..     1    23 []    25.4   0.0078
SM00355     10/13    421   443 ..     1    23 []    26.1   0.0047
SM00355     11/13    449   471 ..     1    23 []    25.4   0.0081
SM00355     12/13    477   499 ..     1    23 []    27.1   0.0024
SM00355     13/13    505   527 ..     1    23 []    24.9    0.011

Alignments of top-scoring domains:
SM00349: domain 1 of 1, from 17 to 78: score 143.0, E = 3.2e-38
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      V F+DVAVdFsqEEWe+L + QrnLYRdV lENYsnLvSL g+++sk
    KIAA0961    17    VMFRDVAVDFSQEEWECLNSYQRNLYRDVILENYSNLVSLAGCSISK 63   

                   pdliskLEqgeEpwi<-*
                   pd+i++LEqg+Epw+   
    KIAA0961    64 PDVITLLEQGKEPWM    78   

SM00355: domain 1 of 13, from 169 to 191: score 25.4, E = 0.0077
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f+ +++L+ H+r+H   
    KIAA0961   169    YECGE-CGKAFRVRqQLTFHQRIH    191  

SM00355: domain 2 of 13, from 197 to 219: score 25.2, E = 0.009
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f++  +L rH+r+H   
    KIAA0961   197    YECKE-CGKAFRQCaHLSRHQRIH    219  

SM00355: domain 3 of 13, from 225 to 247: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L+ H+r+H   
    KIAA0961   225    YECKK-CGKIFTCGsDLRVHQRIH    247  

SM00355: domain 4 of 13, from 253 to 275: score 30.4, E = 0.00025
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
    KIAA0961   253    YECKE-CGKAFRVRgQLNLHQRIH    275  

SM00355: domain 5 of 13, from 281 to 301: score 16.0, E = 5
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+++ +L+rH+r     
    KIAA0961   281    YECKE-CGKAFRQYaHLTRHQR--    301  

SM00355: domain 6 of 13, from 309 to 331: score 18.9, E = 0.74
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f   + L+ H + H   
    KIAA0961   309    YECKE-CGQAFLCStGLRLHHKLH    331  

SM00355: domain 7 of 13, from 337 to 359: score 29.1, E = 0.00062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L+ H+r+H   
    KIAA0961   337    YECKE-CGKAFRVRqQLTLHQRIH    359  

SM00355: domain 8 of 13, from 365 to 387: score 26.7, E = 0.0031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk+fs+  +L+ H+r+H   
    KIAA0961   365    YDCKE-CGKTFSRGyHLTLHQRIH    387  

SM00355: domain 9 of 13, from 393 to 415: score 25.4, E = 0.0078
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+k f+++++L+ H+ +H   
    KIAA0961   393    YECKE-CQKFFRRYsELISHQGIH    415  

SM00355: domain 10 of 13, from 421 to 443: score 26.1, E = 0.0047
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+  ++L++H+ +H   
    KIAA0961   421    YECKE-CGKAFRLFsQLTQHQSIH    443  

SM00355: domain 11 of 13, from 449 to 471: score 25.4, E = 0.0081
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C k+f+  ++L++H+ +H   
    KIAA0961   449    FKCKE-CEKTFRLLsQLTQHQSIH    471  

SM00355: domain 12 of 13, from 477 to 499: score 27.1, E = 0.0024
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ Cgk f+ +++L++H+r+H   
    KIAA0961   477    YDCKE-CGKAFRLHsSLIQHQRIH    499  

SM00355: domain 13 of 13, from 505 to 527: score 24.9, E = 0.011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C+k f+++++L+ H+r+H   
    KIAA0961   505    YKCKE-CKKAFRQHsHLTYHQRIH    527  

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