hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18024638/chunk_1/iprscan-20080502-18024638.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0961 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 387.2 2.3e-113 13 PF00096.16.fs Zinc finger, C2H2 type 365.0 1.1e-106 13 PF01352.17.fs KRAB box 94.7 2.8e-26 1 PF01352.17.ls KRAB box 96.7 6.6e-26 1 PF01096.9.fs Transcription factor S-II (TFIIS) 72.7 8.4e-22 13 PF01286.9.fs XPA protein N-terminal 40.3 1e-10 11 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.4 1.3e-05 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 17 57 .. 1 41 [] 94.7 2.8e-26 PF01352.17.ls 1/1 17 57 .. 1 41 [] 96.7 6.6e-26 PF00096.16.fs 1/13 169 191 .. 1 24 [] 29.2 5.1e-06 PF00096.16.ls 1/13 169 191 .. 1 24 [] 31.1 3.5e-06 PF00096.16.fs 2/13 197 219 .. 1 24 [] 32.3 8.3e-07 PF00096.16.ls 2/13 197 219 .. 1 24 [] 34.3 3.9e-07 PF00096.16.ls 3/13 225 247 .. 1 24 [] 26.5 8.5e-05 PF00096.16.fs 3/13 225 247 .. 1 24 [] 24.6 7.1e-05 PF00096.16.fs 4/13 253 275 .. 1 24 [] 32.9 6.1e-07 PF00096.16.ls 4/13 253 275 .. 1 24 [] 34.8 2.7e-07 PF00096.16.fs 5/13 281 301 .. 1 22 [. 26.1 3e-05 PF00096.16.ls 5/13 281 308 .. 1 24 [] 24.7 0.0003 PF00096.16.fs 7/13 337 359 .. 1 24 [] 32.1 9.3e-07 PF00096.16.ls 7/13 337 359 .. 1 24 [] 34.1 4.5e-07 PF00096.16.ls 8/13 365 387 .. 1 24 [] 33.1 8.9e-07 PF00096.16.fs 8/13 365 387 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 9/13 393 415 .. 1 24 [] 28.8 1.8e-05 PF00096.16.fs 9/13 393 415 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 10/13 421 443 .. 1 24 [] 31.3 3.2e-06 PF00096.16.fs 10/13 421 443 .. 1 24 [] 29.3 4.8e-06 PF00096.16.ls 11/13 449 471 .. 1 24 [] 30.4 5.7e-06 PF00096.16.fs 11/13 449 471 .. 1 24 [] 28.5 7.6e-06 PF00096.16.fs 12/13 477 499 .. 1 24 [] 30.3 2.6e-06 PF00096.16.ls 12/13 477 499 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 13/13 505 527 .. 1 24 [] 28.9 6e-06 PF00096.16.ls 13/13 505 527 .. 1 24 [] 30.8 4.3e-06 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 17 to 57: score 94.7, E = 2.8e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DVaVdF+qEEWe+L++ QrnLYrdV+lENysnLvSl KIAA0961 17 VMFRDVAVDFSQEEWECLNSYQRNLYRDVILENYSNLVSLA 57 PF01352.17.ls: domain 1 of 1, from 17 to 57: score 96.7, E = 6.6e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DVaVdF+qEEWe+L++ QrnLYrdV+lENysnLvSl KIAA0961 17 VMFRDVAVDFSQEEWECLNSYQRNLYRDVILENYSNLVSLA 57 PF00096.16.fs: domain 1 of 13, from 169 to 191: score 29.2, E = 5.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+ + +L+ H+r+H KIAA0961 169 YECG-ECGKAFRVRQQLTFHQRIH 191 PF00096.16.ls: domain 1 of 13, from 169 to 191: score 31.1, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+ + +L+ H+r+H KIAA0961 169 YECG-ECGKAFRVRQQLTFHQRIH 191 PF00096.16.fs: domain 2 of 13, from 197 to 219: score 32.3, E = 8.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ ++L rH+r+H KIAA0961 197 YECK-ECGKAFRQCAHLSRHQRIH 219 PF00096.16.ls: domain 2 of 13, from 197 to 219: score 34.3, E = 3.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ ++L rH+r+H KIAA0961 197 YECK-ECGKAFRQCAHLSRHQRIH 219 PF00096.16.ls: domain 3 of 13, from 225 to 247: score 26.5, E = 8.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ s+L+ H+r+H KIAA0961 225 YECK-KCGKIFTCGSDLRVHQRIH 247 PF00096.16.fs: domain 3 of 13, from 225 to 247: score 24.6, E = 7.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ s+L+ H+r+H KIAA0961 225 YECK-KCGKIFTCGSDLRVHQRIH 247 PF00096.16.fs: domain 4 of 13, from 253 to 275: score 32.9, E = 6.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H KIAA0961 253 YECK-ECGKAFRVRGQLNLHQRIH 275 PF00096.16.ls: domain 4 of 13, from 253 to 275: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +++L+ H+r+H KIAA0961 253 YECK-ECGKAFRVRGQLNLHQRIH 275 PF00096.16.fs: domain 5 of 13, from 281 to 301: score 26.1, E = 3e-05 *->ykCpfdCgksFsrksnLkrHlr<-* y+C+ +Cgk+F++ ++L+rH+r KIAA0961 281 YECK-ECGKAFRQYAHLTRHQR 301 PF00096.16.ls: domain 5 of 13, from 281 to 308: score 24.7, E = 0.0003 *->ykCpfdCgksFsrksnLkrHlrt.....H<-* y+C+ +Cgk+F++ ++L+rH+r + +++ KIAA0961 281 YECK-ECGKAFRQYAHLTRHQRLniaekC 308 PF00096.16.fs: domain 7 of 13, from 337 to 359: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H KIAA0961 337 YECK-ECGKAFRVRQQLTLHQRIH 359 PF00096.16.ls: domain 7 of 13, from 337 to 359: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ + +L+ H+r+H KIAA0961 337 YECK-ECGKAFRVRQQLTLHQRIH 359 PF00096.16.ls: domain 8 of 13, from 365 to 387: score 33.1, E = 8.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fsr ++L+ H+r+H KIAA0961 365 YDCK-ECGKTFSRGYHLTLHQRIH 387 PF00096.16.fs: domain 8 of 13, from 365 to 387: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+Fsr ++L+ H+r+H KIAA0961 365 YDCK-ECGKTFSRGYHLTLHQRIH 387 PF00096.16.ls: domain 9 of 13, from 393 to 415: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k F+r s+L +H+ +H KIAA0961 393 YECK-ECQKFFRRYSELISHQGIH 415 PF00096.16.fs: domain 9 of 13, from 393 to 415: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+k F+r s+L +H+ +H KIAA0961 393 YECK-ECQKFFRRYSELISHQGIH 415 PF00096.16.ls: domain 10 of 13, from 421 to 443: score 31.3, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L++H+ +H KIAA0961 421 YECK-ECGKAFRLFSQLTQHQSIH 443 PF00096.16.fs: domain 10 of 13, from 421 to 443: score 29.3, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ s+L++H+ +H KIAA0961 421 YECK-ECGKAFRLFSQLTQHQSIH 443 PF00096.16.ls: domain 11 of 13, from 449 to 471: score 30.4, E = 5.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F+ s+L++H+ +H KIAA0961 449 FKCK-ECEKTFRLLSQLTQHQSIH 471 PF00096.16.fs: domain 11 of 13, from 449 to 471: score 28.5, E = 7.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C k+F+ s+L++H+ +H KIAA0961 449 FKCK-ECEKTFRLLSQLTQHQSIH 471 PF00096.16.fs: domain 12 of 13, from 477 to 499: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ +s+L +H+r+H KIAA0961 477 YDCK-ECGKAFRLHSSLIQHQRIH 499 PF00096.16.ls: domain 12 of 13, from 477 to 499: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk+F+ +s+L +H+r+H KIAA0961 477 YDCK-ECGKAFRLHSSLIQHQRIH 499 PF00096.16.fs: domain 13 of 13, from 505 to 527: score 28.9, E = 6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s+L+ H+r+H KIAA0961 505 YKCK-ECKKAFRQHSHLTYHQRIH 527 PF00096.16.ls: domain 13 of 13, from 505 to 527: score 30.8, E = 4.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+++s+L+ H+r+H KIAA0961 505 YKCK-ECKKAFRQHSHLTYHQRIH 527 //