hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17591893/chunk_1/iprscan-20080502-17591893.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0960 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 401.0 6.6e-116 15 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00209 1/15 42 92 .. 1 66 [] 70.3 2.4e-16 SM00209 2/15 208 268 .. 1 66 [] 36.1 4.7e-06 SM00209 3/15 271 355 .. 1 66 [] 8.6 1.2 SM00209 4/15 360 419 .. 1 66 [] 12.1 0.48 SM00209 5/15 482 540 .. 1 66 [] 44.8 1.1e-08 SM00209 6/15 543 614 .. 1 66 [] 6.8 1.9 SM00209 7/15 619 676 .. 1 66 [] 33.4 3.1e-05 SM00209 8/15 754 804 .. 1 66 [] 19.2 0.076 SM00209 9/15 883 940 .. 1 66 [] 41.0 1.5e-07 SM00209 10/15 943 1008 .. 1 66 [] 10.6 0.72 SM00209 11/15 1013 1065 .. 1 66 [] 24.0 0.021 SM00209 12/15 1068 1129 .. 1 66 [] 8.4 1.3 SM00209 13/15 1134 1186 .. 1 66 [] 52.4 6e-11 SM00209 14/15 1187 1257 .. 1 66 [] 18.4 0.095 SM00209 15/15 1262 1320 .. 1 66 [] 14.8 0.24 Alignments of top-scoring domains: SM00209: domain 1 of 15, from 42 to 92: score 70.3, E = 2.4e-16 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +se+s WS+CS +tCG+G ++RtR + +pp q+gg KIAA0960 42 VSEFSAWSECS-KTCGSG-----LQHRTR-----HVVAPP---QFGG 74 epCs...EtrpCntqpnLqpCp<-* + C++ +E++ C + pC+ KIAA0960 75 SGCPnltEFQVCQSS----PCE 92 SM00209: domain 2 of 15, from 208 to 268: score 36.1, E = 4.7e-06 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +seWseWSpCS +tC ++ g+r+RtR+ +p + KIAA0960 208 VSEWSEWSPCS-KTCHDMVSPAGTRVRTRT----IRQFPI----GSE 245 epCs...EtrpCntqpn.LqpCp<-* ++C++ +E++pC q ++ pC KIAA0960 246 KECPefeEKEPCLSQGDgVVPCA 268 SM00209: domain 3 of 15, from 271 to 355: score 8.6, E = 1.2 *->wseWseWSpCSg...............vtCGgGgrtegvrtRtRssl + ++eW++C +++ ++++++++++++ CGgG ++tR+ + KIAA0960 271 GWRTTEWTECRVdpllsqqdkrrgnqtALCGGG-----IQTREVY-- 310 rvccspppprnqnggepCs......................EtrpCntqp c+ +++ n ++ s++++++ +++ + + +++ ++ t+ C KIAA0960 311 --CVQANE----NLLSQLSthknkeaskpmdlklctgpipnTTQLCHI-- 352 nLqpCp<-* pCp KIAA0960 353 ---PCP 355 SM00209: domain 4 of 15, from 360 to 419: score 12.1, E = 0.48 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg +s+Ws W+pC+ + C + +g++ R+R+ +++ + + KIAA0960 360 VSPWSAWGPCTYENCNDQQGKKGFKLRKRR-ITNEPTGGS----GVT 401 epCs...EtrpCntqpnLqpCp<-* ++C++ E pC+++ +C KIAA0960 402 GNCPhllEAIPCEEP----ACY 419 SM00209: domain 5 of 15, from 482 to 540: score 44.8, E = 1.1e-08 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg s+Ws WS+CS tC +G teg ++R R +++ ++ + gg KIAA0960 482 LSTWSTWSSCS-HTC-SGKTTEGKQIRAR-----SILAYAG--EEGG 519 epCs......EtrpCntqpnLqpCp<-* +C++++ +E+r Cn++ pC KIAA0960 520 IRCPnssalqEVRSCNEH----PCT 540 SM00209: domain 6 of 15, from 543 to 614: score 6.8, E = 1.9 *->wseWseWSpCSg................vtCGgGgrtegvrtRtRss ++++++W++C +++ ++ +++++ +++++C G ++tR+ KIAA0960 543 HWQTGPWGQCIEdtsvssfnttttwngeASCSVG-----MQTRKVI- 583 lrvccspppprnqnggepCs......EtrpCntqpnLqpCp<-* c++ + + q+g + C+++ +++ +rpC + pC KIAA0960 584 ---CVRVNVG--QVGPKKCPeslrpeTVRPCLL-----PCK 614 SM00209: domain 7 of 15, from 619 to 676: score 33.4, E = 3.1e-05 *->wseWseWSpCSgvtCGgG...grtegvrtRtRsslrvccspppprnq +++ s+W++C +C +G++++r ++R+R ++ p KIAA0960 619 VTPYSDWTSCP-SSCKEGdssIR---KQSRHR-----VIIQLP---A 653 nggepCs....EtrpCntqpnLqpCp<-* ngg++C+++ E ++C+ + q+C KIAA0960 654 NGGRDCTdplyEEKACEAP---QACQ 676 SM00209: domain 8 of 15, from 754 to 804: score 19.2, E = 0.076 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++Ws S+C g CG vrtR+R + + + ++ KIAA0960 754 LTSWSKFSSCNG-DCGA------VRTRKR-----TLVGKS----KKK 784 epCs........EtrpCntqpnLqpCp<-* e C +++ + Et+ C C+ KIAA0960 785 EKCKnshlypliETQYCP-------CD 804 SM00209: domain 9 of 15, from 883 to 940: score 41.0, E = 1.5e-07 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg seWs WS CS ++CG+G v++R+ + p ngg KIAA0960 883 LSEWSNWSRCS-KSCGSG-----VKVRSK----WLREKPY----NGG 915 epCs...........EtrpCntqpnLqpCp<-* +pC++ ++ ++ + E+ pC +C KIAA0960 916 RPCPkldhvnqaqvyEVVPCHS-----DCN 940 SM00209: domain 10 of 15, from 943 to 1008: score 10.6, E = 0.72 *->wseWseWSpCSg......vtCGgGgrtegvrtRtRsslrvccspppp + +++WS C ++ + ++ CG+G v+tR+ + c + + KIAA0960 943 LWVTEPWSICKVtfvnmrENCGEG-----VQTRKVR----CMQNTA- 979 rnqnggepCs...........EtrpCntqpnLqpCp<-* + + e+ ++ ++++ + +r C + pCp KIAA0960 980 --DGPSEHVEdylcdpeemplGSRVCKL-----PCP 1008 SM00209: domain 11 of 15, from 1013 to 1065: score 24.0, E = 0.021 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg seW++W++C +C ++ R+ p +++ g KIAA0960 1013 ISEWGPWTQCV-LPC--------NQSSFRQ----RSADPIRQPADEG 1046 epCs...EtrpCntqpnLqpCp<-* ++C++ E++pCn++ ++C KIAA0960 1047 RSCPnavEKEPCNLN---KNCY 1065 SM00209: domain 12 of 15, from 1068 to 1129: score 8.4, E = 1.3 *->wseWseWSpCSg...vtCGgGgrtegvrtRtRsslrvccspppprnq ++WS+C ++++ CG G ++tR c++ ++ KIAA0960 1068 DYNVTDWSTCQLsekAVCGNG-----IKTRMLD----CVRSDGK--S 1103 nggepCs.........EtrpCntqpnLqpCp<-* ++ ++C+ + +++ ++ C++ +Cp KIAA0960 1104 VDLKYCEalgleknwqMNTSCMV-----ECP 1129 SM00209: domain 13 of 15, from 1134 to 1186: score 52.4, E = 6e-11 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg s+Ws+WS+CS +tCG g +R+R ++ p q +g KIAA0960 1134 LSDWSPWSECS-QTCGLT----GKMIRRR-----TVTQPF---QGDG 1167 epCs....EtrpCntqpnLqpCp<-* +pC++ ++++pC + pC KIAA0960 1168 RPCPslmdQSKPCPVK----PCY 1186 SM00209: domain 14 of 15, from 1187 to 1257: score 18.4, E = 0.095 *->wseWseWSpCSg..vtCGgGgrtegvrtRtRsslrvccspppprnqn ++ + WSpC +++++CG+G +rtR+ s c+ ++ KIAA0960 1187 RWQYGQWSPCQVqeAQCGEG-----TRTRNIS----CVVSDGS--AD 1222 ggepCs...................EtrpCntqpnLqpCp<-* +++ +++ + + +++++ + C+ pCp KIAA0960 1223 DFSKVVdeefcadieliidgnknmvLEESCSQ-----PCP 1257 SM00209: domain 15 of 15, from 1262 to 1320: score 14.8, E = 0.24 *->wseWseWSpCSgvtC......GgGgrtegvrtRtRsslrvccspppp +Ws+WS C tC ++++ G G g+++R+R + + KIAA0960 1262 LKDWSSWSLCQ-LTCvngedlGFG----GIQVRSR-----PVIIQE- 1297 rnqnggepCs....EtrpCntqpnLqpCp<-* + + C+++ Et+ C C KIAA0960 1298 --LENQHLCPeqmlETKSCYDG----QCY 1320 //