hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17573515/chunk_1/iprscan-20080502-17573515.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0959 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00147 402.4 2.6e-116 1 SM00229 138.5 7e-37 1 SM00314 100.7 1.7e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00229 1/1 116 248 .. 1 172 [] 138.5 7e-37 SM00147 1/1 280 554 .. 1 261 [] 402.4 2.6e-116 SM00314 1/1 700 787 .. 1 102 [] 100.7 1.7e-25 Alignments of top-scoring domains: SM00229: domain 1 of 1, from 116 to 248: score 138.5, E = 7e-37 *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi ck+++iK+GtlekL+e L+ a+ + D t++ +FL TYR F KIAA0959 116 CKIRTIKAGTLEKLVENLLTAFGD------NDFTYISIFLSTYRGFA 156 ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedysknaipvgf +t e+l++LldrY + + +++ed+ KIAA0959 157 STKEVLELLLDRYGNLTSP----------------NCEEDG--------- 181 aetdiivkekvnprriqnrVlnilrlWvenywedFeedpklnlfLeelfl +++++++ i+n +++ilr W++++ edF e+p ++++L++ +l KIAA0959 182 -----SQSSSESKMVIRNAIASILRAWLDQCAEDFREPP-HFPCLQK-LL 224 elvedkkdkgpglekslanilerls<-* + ++++ +g++ e++++n+le+++ KIAA0959 225 DYLTRMM-PGSDPERRAQNLLEQFQ 248 SM00147: domain 1 of 1, from 280 to 554: score 402.4, E = 2.6e-116 *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap +++++ + +AeQLT++d++lF+k++p+++lg++w++r+kk++++lap KIAA0959 280 FTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAP 326 qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn +++a+i++fN+++ +V+++Il+ ++lk ++Ra++++k+I++A++cr L+ KIAA0959 327 -TIRATISQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRLLK 375 NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk NF+Sl AIvsaL+s++I+RLkkTW++++++ + +feeL+++++++ +N+ KIAA0959 376 NFSSLRAIVSALQSNSIYRLKKTWAAVPRDRMLMFEELSDIFSDH-NNHL 424 nYReaLkscnksp.........................nvqppcvPflGv ++Re+L ++++s+ + +++ ++++++++++ + +++ +v++++vP+lG+ KIAA0959 425 TSRELLMKEGTSKfanldssvkenqkrtqrrlqlqkdmGVMQGTVPYLGT 474 yLkDLtfidegnpdflengtkglvNFeKrrkiakilreirqlqsacqpyn +L+DLt++d++ d++e gl+NFeKrr++++++++i++lqsac++y+ KIAA0959 475 FLTDLTMLDTALQDYIEG---GLINFEKRRREFEVIAQIKLLQSACNSYC 521 lkpnrndiqellrasrplevlpeeedelyelSlriEPrv<-* ++p++++iq++ r+ l+ee e+y+lS++iE KIAA0959 522 MTPDQKFIQWFQRQ----QLLTEE--ESYALSCEIEAAA 554 SM00314: domain 1 of 1, from 700 to 787: score 100.7, E = 1.7e-25 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd dt+++r++v+d ++g++yk+++++++++++ Viq+++ k++l++ KIAA0959 700 DTCIIRISVED----NNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDS 742 edpeeYvLvevlpsggkErvLlddenPlqlqklwprdaksprqsslrFvL + +eeY+Lv+v s++kE v++d +n++++++ + ++ +F L KIAA0959 743 DPAEEYELVQVI-SEDKELVIPDSANVFYAMNSQVNF---------DFIL 782 rkrdd<-* rk+++ KIAA0959 783 RKKNS 787 //