hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17523320/chunk_1/iprscan-20080502-17523320.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0956 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01494 ATPase_P-type: ATPase, P-type (transpor 237.8 7.5e-69 4 TIGR01652 ATPase-Plipid: phospholipid-translocati 94.6 9.9e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01652 1/1 1 602 [. 1 1249 [] 94.6 9.9e-26 TIGR01494 3/4 168 218 .. 316 366 .. 77.2 1.7e-20 TIGR01494 4/4 286 394 .. 365 466 .. 118.3 7.4e-33 Alignments of top-scoring domains: TIGR01652: domain 1 of 1, from 1 to 602: score 94.6, E = 9.9e-26 *->FpsNkIsTtKYtvlTFlPKnLFeQFkrfANiYFLvvAllqqvPilsp KIAA0956 - ----------------------------------------------- - tnrgtsivPLavVLlvtaiKeAiEDirRrkrDkevNNrltevLegveNeN + KIAA0956 1 --------------------------------------------D----- 1 vltdnIsLWRklKKFIsytkedlseelKkkrisRKRHellvtkTVdtish KIAA0956 - -------------------------------------------------- - RsSLdSidayrlSvdydrleldeinleqganeasvvdrsltgssdgkFve KIAA0956 - -------------------------------------------------- - ikWKdlrVGDIvKVkkderiPADllLLSSSepdGvCYVETaNLDGETNLK KIAA0956 - -------------------------------------------------- - lRqAleeTqkmlteediknfsGeIecEqPnasLYsFqGnlkidgkakskI +T dg KIAA0956 2 ------CTG---------------------------------DG------ 6 rqlPLspdNiLLRGctLrNTkwviGvVvYTGhDTKlmrNatkaGPsKRSr + KIAA0956 7 ------------------------------------------P------- 7 iEkelNflIiiLFllLivLclissvgagiysdadgkdldlirwYleldks KIAA0956 - -------------------------------------------------- - eRPGGkdYeYrnaaangFfsfltalILFssLIPISLYVslElvKsvQAty Q+ KIAA0956 8 ---------------------------------------------WQS-- 10 FInsDlemYhektDtPasvRtSNLnEeLGQVeYiFSDKTGTLTqNiMeFk KIAA0956 - -------------------------------------------------- - KcsIaGvsYgSdgltevkdalrerkgskveeesakvakDknsmlnelkil +l KIAA0956 11 ---------------------------------------------NLA-- 13 ksnsqkapkgftFvdprLvkllktaknkpnakliqeFflaLAiCHtVvPe KIAA0956 - -------------------------------------------------- - vnddddpeKGeitYQAaSPDEaALVkaArdlGFvfieRtpksIsllieer ++ + Y A+SPDE ALV aA+ G vfi+ + + KIAA0956 14 ---PS-----QLEYYASSPDEKALVEAAARIGIVFIGNSEE--TMEVKTL 53 GkkGkkeekeYeiLnVlEFnSdRKRMSvIvRfPdgnPGDdgrilLlcKGA Gk +Y +L++lEF+SdR RMSvIv P+g + lL+ KGA KIAA0956 54 GKL-----ERYKLLHILEFDSDRRRMSVIVQAPSG------EKLLFAKGA 92 DsVifkRLssssGsggnqvieeTkeHLenyAsEGLRTLciAyReLseeEY s+i++ g ie+T++H +A GLRTLciAyR+ +EY KIAA0956 93 ESSILPKCIG----GE---IEKTRIHVDEFALKGLRTLCIAYRKFTSKEY 135 eeWneeYneAstaLtedReekLdevAelIEkdLiLLGaTAIEDKLQeGVP ee ++ eA taL ReekL +v IEkdLiLLGaTA+ED+LQ+ V KIAA0956 136 EEIDKRIFEARTALQ-QREEKLAAVFQFIEKDLILLGATAVEDRLQDKVR 184 etIElLreAGIKiWVLTGDKvETAINIGySCrLlsenMeli.vIkeesdd etIE Lr AGIK+WVLTGDK ETA +++ SC + M+++++I+ s KIAA0956 185 ETIEALRMAGIKVWVLTGDKHETAVSVSLSCGHFHRTMNILeLINQKS-- 232 IrelEdagdldatervveaaikkiLkeyfelegteeefnelkkdhvpsgn ++++ ++l+ + + e + KIAA0956 233 ---------DSECA--------------EQLRQLARRITEDHV-----IQ 254 vALvIDGksLkyaLdeeDlekeFLqLAlkCkAViCCRVSPsQKAdVVkLV ++Lv+DG+sL++aL e ek+F +++ +C+AV+CCR +P+QKA V +L+ KIAA0956 255 HGLVVDGTSLSLALREH--EKLFMEVCRNCSAVLCCRMAPLQKAKVIRLI 302 KkstGrlskiTLAIGDGANDVSMIQeADVGVGIsGkEGmQAvMASDFAIg K s + iTLA GDGANDVSMIQeA+VG+GI GkEG+QA+++SD+AI+ KIAA0956 303 KISPE--KPITLAVGDGANDVSMIQEAHVGIGIMGKEGRQAARNSDYAIA 350 QFrFLekLLLVHGrWSYkRiskmIlYfFYKNlifalilFWYsfyngFsGq F+FL kLL VHG+ Y+Ri+ +++YfFYKN+ f +F Y+fy Fs q KIAA0956 351 RFKFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFITPQFLYQFYCLFSQQ 400 tlyedWymvlYNvfFTalPVivLGvfDqDvsaslslryPqLYreGqkgke tly++ y+ lYN +FT+lP + +++q v+ ++ P LYr k+ KIAA0956 401 TLYDSVYLTLYNICFTSLPILIYSLLEQHVDPHVLQNKPTLYRDISKNRL 450 fstkvFwgwmldglyQSlviFffpilayklgdfv.ssGevddfssvGviv +s k+F++w ++g+ + + Ff+++l +++++ +G+ ++ + G++v KIAA0956 451 LSIKTFLYWTILGFSHAFIFFFGSYLLIGKDTSLlGNGQMFGNWTFGTLV 500 fTalVvvvnlkiaLeinrWnwisliaiwgSiLvwlifvivyssifptlPa fT+ V++v +k+aLe+ W+wi ++ wgSi ++++f +y++i+ P KIAA0956 501 FTVMVITVTVKMALETHFWTWINHLVTWGSIIFYFVFSLFYGGILW--PF 548 disrefykaakrvmstfgFWlvLlvivlisLLPrFtykalqrlfrPtdye s ++y++ +++s+++ W+ ++ v+++L+ + + k + r ++Pt+ e KIAA0956 549 LGSQNMYFVFIQLLSSGSAWFAIILMVVTCLFLDIIKKVFDRHLHPTSTE 598 iVqE<-* ++q KIAA0956 599 KAQL 602 TIGR01494: domain 3 of 4, from 168 to 218: score 77.2, E = 1.7e-20 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +llG+ta+eD+L++ v etIe+L++aGikvw+lTGD++eTA+++ + KIAA0956 168 ILLGATAVEDRLQDKVRETIEALRMAGIKVWVLTGDKHETAVSVSLS 214 cglf<-* cg+f KIAA0956 215 CGHF 218 TIGR01494: domain 4 of 4, from 286 to 394: score 118.3, E = 7.4e-33 *->lfARvsPeqKaeiVellq...krgaiVamiGDGaNDapALkaADVGi l++R++P+qKa +++l++ +++ + i++++GDGaND++++++A+VGi KIAA0956 286 LCCRMAPLQKAKVIRLIKispE-KPITLAVGDGANDVSMIQEAHVGI 331 ai......gAkaaaDivltddnlslivlllvhGRwtykrikklilyalyy +i +++++ A++ +D++++++ +l +ll+vhG+ +y ri+ l++y++y+ KIAA0956 332 GImgkegrQAARNSDYAIARF-KFLSKLLFVHGHFYYIRIATLVQYFFYK 380 nliliillfvlsvi<-* n+++i ++f+++++ KIAA0956 381 NVCFITPQFLYQFY 394 //