hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17505612/chunk_1/iprscan-20080502-17505612.nocrc
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Query sequence: KIAA0955
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00619.12.ls Caspase recruitment domain                      94.5    2.9e-25   1
PF00619.12.fs Caspase recruitment domain                      92.5    5.2e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00619.12.fs   1/1     399   483 ..     1    89 []    92.5  5.2e-25
PF00619.12.ls   1/1     399   483 ..     1    89 []    94.5  2.9e-25

Alignments of top-scoring domains:
PF00619.12.fs: domain 1 of 1, from 399 to 483: score 92.5, E = 5.2e-25
                   *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt
                       +++++n+++L++r+g  +l+g+LD+L  ++VLte+e E++ + ++t
    KIAA0955   399    AAFVKENHRQLQARMG--DLKGVLDDLQDNEVLTENEKELVEQ-EKT 442  

                   rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-*
                   r++k+++Ll++v+kkG+ a++++++++ e  +p+L+++l+++   
    KIAA0955   443 RQSKNEALLSMVEKKGDLALDVLFRSISE-RDPYLVSYLRQQ    483  

PF00619.12.ls: domain 1 of 1, from 399 to 483: score 94.5, E = 2.9e-25
                   *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt
                       +++++n+++L++r+g  +l+g+LD+L  ++VLte+e E++ + ++t
    KIAA0955   399    AAFVKENHRQLQARMG--DLKGVLDDLQDNEVLTENEKELVEQ-EKT 442  

                   rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-*
                   r++k+++Ll++v+kkG+ a++++++++ e  +p+L+++l+++   
    KIAA0955   443 RQSKNEALLSMVEKKGDLALDVLFRSISE-RDPYLVSYLRQQ    483  

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