# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj05544.fasta.huge -Q ../query/KIAA0955.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0955, 485 aa
 vs ./tmplib.23663 library

1987020 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.0744+/-0.00482; mu= 12.1498+/- 0.328
 mean_var=80.9833+/-18.759, 0's: 0 Z-trim: 2  B-trim: 7 in 1/39
 Lambda= 0.142520

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0926  ( 1447 res)   hh02962                    (1447)  632 140.1 9.5e-34


>>KIAA0926  ( 1447 res)   hh02962                         (1447 aa)
 initn: 613 init1: 350 opt: 632  Z-score: 697.8  bits: 140.1 E(): 9.5e-34
Smith-Waterman score: 825;  38.519% identity (63.457% similar) in 405 aa overlap (90-483:1077-1436)

      60        70        80        90       100       110         
KIAA09 QSHYCSVLFLSVNYLGGTFPGDICSEENQIVSSYASKVCFEIEEDYKNRQFLGPEGNVDV
                                     : : ::.  .. .    . .: :: : : .
KIAA09 LKLLDVSKIFPIAEIAEESSPEVVPVELLCVPSPASQGDLHTKPLGTDDDFWGPTGPVAT
       1050      1060      1070      1080      1090      1100      

     120       130       140       150       160       170         
KIAA09 ELIDKSTNRYSVWFPTAGWYLWSATGLGFLVRDEVTVTIAFGSWSQHLALDLQHHEQWLV
       :..::  : : : ::.:: : :  ::: :..:. ::: : :  :.: :. ... ...:.:
KIAA09 EVVDKEKNLYRVHFPVAGSYRWPNTGLCFVMREAVTVEIEFCVWDQFLG-EINPQHSWMV
       1110      1120      1130      1140      1150       1160     

     180       190       200        210       220       230        
KIAA09 GGPLFDVTAEPEEAVAEIHLPHFISLQG-EVDVSWFLVAHFKNEGMVLEHPARVEPFYAV
       .:::.:. :::  ::  .:::::..::: .::.: : .::::.:::.::.:::::  . :
KIAA09 AGPLLDIKAEPG-AVEAVHLPHFVALQGGHVDTSLFQMAHFKEEGMLLEKPARVELHHIV
        1170       1180      1190      1200      1210      1220    

      240       250       260       270       280       290        
KIAA09 LESPSFSLMGILLRIASGTRLSIPITSNTLIYYHPHPEDIKFHLYLVPSDALLTKAIDDE
       ::.:::: .:.::..  ..   ::.:: .:.:.. :::.. :::::.:::          
KIAA09 LENPSFSPLGVLLKMIHNALRFIPVTSVVLLYHRVHPEEVTFHLYLIPSDC---------
         1230      1240      1250      1260      1270              

      300       310       320       330       340       350        
KIAA09 EDRFHGVRLQTSPPMEPLNFGSSYIVSNSANLKVMPKELKLSYRSPGEIQHFSKFYAGQM
            ..:                            :::.: :::::: : ::.::.:..
KIAA09 -----SIR----------------------------KELELCYRSPGEDQLFSEFYVGHL
                                         1280      1290      1300  

      360       370       380       390              400           
KIAA09 KEPIQLEITEKRHGTLVWDTEVKPVDLQLVAASAPP-------PFSGAA---FVKENHRQ
          :.:.. .:.  ::::.. ::: ::. ...  ::       :...     :: . ..:
KIAA09 GSGIRLQVKDKKDETLVWEALVKPGDLMPATTLIPPARIAVPSPLDAPQLLHFVDQYREQ
           1310      1320      1330      1340      1350      1360  

      410       420       430       440       450       460        
KIAA09 LQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFRS
       : ::. ... ::: :. ..::.... : :  :.:: :. . :.:. ..      : :...
KIAA09 LIARVTSVEVVLDKLH-GQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQA
           1370       1380      1390      1400      1410      1420 

      470       480              
KIAA09 ISERDPYLVSYLRQQNL         
       ..:  :.:.  : ..           
KIAA09 LKETHPHLIMELWEKGSKKGLLPLSS
            1430      1440       




485 residues in 1 query   sequences
1987020 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:01 2008 done: Thu Dec 18 15:23:02 2008
 Total Scan time:  0.440 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]