hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17410334/chunk_1/iprscan-20080502-17410334.nocrc
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Query sequence: KIAA0949
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00036                                                 372.2   3.1e-107   1
SM00109                                                  46.9    2.6e-09   1
SM00233                                                  44.3    1.6e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00109     1/1     896   944 ..     1    61 []    46.9  2.6e-09
SM00233     1/1     977  1098 ..     1    82 []    44.3  1.6e-08
SM00036     1/1    1125  1422 ..     1   375 []   372.2 3.1e-107

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 896 to 944: score 46.9, E = 2.6e-09
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f  +   + t+C+vC +++ ++      +q+ +C eC+v+cH kC
    KIAA0949   896    HRFNVGLNmRATKCAVCLDTVHFG------RQASKCLECQVMCHPKC 936  

                   aekvpaqshksglsC<-*
                   ++++pa       +C   
    KIAA0949   937 STCLPA-------TC    944  

SM00233: domain 1 of 1, from 977 to 1098: score 44.3, E = 1.6e-08
                   *->vikeGwLlkks.....k.swkkryfvLfngvLlyyksk.kpkgsipL
                      + +eGw+++  +++++ ++w ++y vL ++ +l+y+++ +  g  p+
    KIAA0949   977    LHLEGWMKVPRnnkrgQqGWDRKYIVLEGSKVLIYDNEaREAGQRPV 1023 

                   sgcsvre.p......................cFeivt.dr.........t
                   ++ ++  ++++ + ++  + ++  +  + +    ++++++++++  +++t
    KIAA0949  1024 EEFELCLpDgdvsihgavgaselantakadvPYILKMeSHphttcwpgrT 1073 

                   lllqAeseeereeWvealqsaiaka<-*
                   l+l A+s  ++++Wv+al+s++a     
    KIAA0949  1074 LYLLAPSFPDKQRWVTALESVVAGG    1098 

SM00036: domain 1 of 1, from 1125 to 1422: score 372.2, E = 3.1e-107
                   *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl
                      ++++++ p++++     ++LvgTeeGLY+ln+ ++       +l++ 
    KIAA0949  1125    LDMNCTLPFSDQ-----VVLVGTEEGLYALNVLKN-------SLTHV 1159 

                   isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpiik
                   +++++v+qi++++++++Llmi+G+   +++++L++++++          k
    KIAA0949  1160 PGIGAVFQIYIIKDLEKLLMIAGE---ERALCLVDVKKV----------K 1196 

                   dalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqss
                   ++l++++l+++++++++++++vkG chl+++ +++++   l++caa++s+
    KIAA0949  1197 QSLAQSHLPAQPDISPNIFEAVKG-CHLFGA-GKIEN--GLCICAAMPSK 1242 

                   VvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelvs
                   Vv+l  +yn ++++++++                  k+i+++++++++++
    KIAA0949  1243 VVIL--RYNENLSKYCIR------------------KEIETSEPCSCIHF 1272 

                   ssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslvskedlsl
                   +++   +++iG++k    ++++d++q+++          e++++k+d+sl
    KIAA0949  1273 TNY---SILIGTNK----FYEIDMKQYTL----------EEFLDKNDHSL 1305 

                   pfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqGle
                   ++a++++ss     ++++v++vq +++GqR+e+Llc++efgvfV+++G  
    KIAA0949  1306 APAVFAASS-----NSFPVSIVQVNSAGQREEYLLCFHEFGVFVDSYG-- 1348 

                   vrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgelNlqelad
                    rrsr+++l+w++ p +fay+epyl+++h+n++e+++i+++++  +++a+
    KIAA0949  1349 -RRSRTDDLKWSRLPLAFAYREPYLFVTHFNSLEVIEIQARSS-AGTPAR 1396 

                   rsiikarkiRlLgsCeisdrkIllsssp<-*
                   + ++ ++++R+Lg+ +is+++I+l+ss+   
    KIAA0949  1397 A-YLDIPNPRYLGP-AISSGAIYLASSY    1422 

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