hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17410334/chunk_1/iprscan-20080502-17410334.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0949 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00780.12.ls CNH domain 328.4 1.2e-95 1 PF00780.12.fs CNH domain 326.6 4e-95 1 PF00169.19.fs PH domain 50.8 5.5e-15 1 PF00169.19.ls PH domain 52.8 1.1e-12 1 PF00130.12.fs Phorbol esters/diacylglycerol binding domai 31.1 6.8e-08 1 PF00130.12.ls Phorbol esters/diacylglycerol binding domai 33.1 9.3e-07 1 PF02996.8.fs Prefoldin subunit 21.5 1.6e-05 5 PF02370.7.ls M protein repeat 20.6 0.0051 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00130.12.fs 1/1 896 947 .. 1 55 [] 31.1 6.8e-08 PF00130.12.ls 1/1 896 947 .. 1 55 [] 33.1 9.3e-07 PF00169.19.fs 1/1 977 1096 .. 1 92 [] 50.8 5.5e-15 PF00169.19.ls 1/1 977 1096 .. 1 92 [] 52.8 1.1e-12 PF00780.12.fs 1/1 1126 1416 .. 1 363 [] 326.6 4e-95 PF00780.12.ls 1/1 1126 1416 .. 1 363 [] 328.4 1.2e-95 Alignments of top-scoring domains: PF00130.12.fs: domain 1 of 1, from 896 to 947: score 31.1, E = 6.8e-08 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H+F ++ + t+C++C + + + +g+q+ kC +C++ +H +C++ KIAA0949 896 HRFNVG-LNMRATKCAVCLDTV-H-FGRQASKCLECQVMCHPKCSTC 939 VppeCgcg<-* +p+ Cg+ KIAA0949 940 LPATCGLP 947 PF00130.12.ls: domain 1 of 1, from 896 to 947: score 33.1, E = 9.3e-07 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H+F ++ + t+C++C + + + +g+q+ kC +C++ +H +C++ KIAA0949 896 HRFNVG-LNMRATKCAVCLDTV-H-FGRQASKCLECQVMCHPKCSTC 939 VppeCgcg<-* +p+ Cg+ KIAA0949 940 LPATCGLP 947 PF00169.19.fs: domain 1 of 1, from 977 to 1096: score 50.8, E = 5.5e-15 *->vikeGwLlkkg....gkkswkkRyfvLfddvLlyykdkkkkpkgsip ++ eGw+++ ++++g +w + y+vL +++ l+y+++ ++ g p KIAA0949 977 LHLEGWMKVPRnnkrGQQGWDRKYIVLEGSKVLIYDNE-AREAGQRP 1022 Lsgiqvtkvpdn..................krkncFeirt.dr......e +++ +++ ++ + ++ + ++ ++ + + ++++++ ++ +++ +++ KIAA0949 1023 VEEFELCLPDGDvsihgavgaselantakaDVPYILKMEShPHttcwpgR 1072 tlllqaeseeerkeWvkaiqsair<-* tl+l a+s ++++Wv+a++s+++ KIAA0949 1073 TLYLLAPSFPDKQRWVTALESVVA 1096 PF00169.19.ls: domain 1 of 1, from 977 to 1096: score 52.8, E = 1.1e-12 *->vikeGwLlkkg....gkkswkkRyfvLfddvLlyykdkkkkpkgsip ++ eGw+++ ++++g +w + y+vL +++ l+y+++ ++ g p KIAA0949 977 LHLEGWMKVPRnnkrGQQGWDRKYIVLEGSKVLIYDNE-AREAGQRP 1022 Lsgiqvtkvpdn..................krkncFeirt.dr......e +++ +++ ++ + ++ + ++ ++ + + ++++++ ++ +++ +++ KIAA0949 1023 VEEFELCLPDGDvsihgavgaselantakaDVPYILKMEShPHttcwpgR 1072 tlllqaeseeerkeWvkaiqsair<-* tl+l a+s ++++Wv+a++s+++ KIAA0949 1073 TLYLLAPSFPDKQRWVTALESVVA 1096 PF00780.12.fs: domain 1 of 1, from 1126 to 1416: score 326.6, E = 4e-95 *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv ++n+++++ ++q +LvGTeeGLY+ln+ ++ l+++ g+ v KIAA0949 1126 DMNCTLPF-SDQVVLVGTEEGLYALNVLKN------SLTHVPGIGAV 1165 tqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgsskilrlpe +q+++i++l++Ll+++ G++r L+l++++++ +++l++ KIAA0949 1166 FQIYIIKDLEKLLMIA-GEERALCLVDVKKV-------------KQSLAQ 1201 ktlarrfavskKipetkghCklccvgfiaegycggtkFLcvvAlksddls ++l++++ +s++i+e ++C+l+ +g+i++g+c +c A++s KIAA0949 1202 SHLPAQPDISPNIFEAVKGCHLFGAGKIENGLC-----ICA-AMPS---- 1241 tsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsief +++++++ n+++++ +++ke++++ep+++i+f KIAA0949 1242 -KVVILRY------------------NENLSKYCIRKEIETSEPCSCIHF 1272 lkpslcvGcskgfeillvlfgssgfhsldleGqseaaldlllPsndlsle +++s+++G++k++ei++ ++++l+ +l++nd+sl+ KIAA0949 1273 TNYSILIGTNKFYEIDM----------------KQYTLEEFLDKNDHSLA 1306 fakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrkkk +a+++ s +++++ +v++++ ++r+eyLLCf+efgvfV+ +Grrsr++ KIAA0949 1307 PAVFAA-SSNSFPVSIVQVNSAGQREEYLLCFHEFGVFVDSYGRRSRTD- 1354 diselmWegaPesfayslypyllafhdngieIrsletgeltqeladrvqt +l+W + P +fay+ +pyl++ h+n++e+++++ +++ +++a++++ KIAA0949 1355 ---DLKWSRLPLAFAYR-EPYLFVTHFNSLEVIEIQARSSAGTPARAYLD 1400 illnkirllvslrsls<-* i++ ++ ++++++++ KIAA0949 1401 IPNPRYLGPAISSGAI 1416 PF00780.12.ls: domain 1 of 1, from 1126 to 1416: score 328.4, E = 1.2e-95 *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv ++n+++++ ++q +LvGTeeGLY+ln+ ++ l+++ g+ v KIAA0949 1126 DMNCTLPF-SDQVVLVGTEEGLYALNVLKN------SLTHVPGIGAV 1165 tqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgsskilrlpe +q+++i++l++Ll+++ G++r L+l++++++ +++l++ KIAA0949 1166 FQIYIIKDLEKLLMIA-GEERALCLVDVKKV-------------KQSLAQ 1201 ktlarrfavskKipetkghCklccvgfiaegycggtkFLcvvAlksddls ++l++++ +s++i+e ++C+l+ +g+i++g+c +c A++s KIAA0949 1202 SHLPAQPDISPNIFEAVKGCHLFGAGKIENGLC-----ICA-AMPS---- 1241 tsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsief +++++++ n+++++ +++ke++++ep+++i+f KIAA0949 1242 -KVVILRY------------------NENLSKYCIRKEIETSEPCSCIHF 1272 lkpslcvGcskgfeillvlfgssgfhsldleGqseaaldlllPsndlsle +++s+++G++k++ei++ ++++l+ +l++nd+sl+ KIAA0949 1273 TNYSILIGTNKFYEIDM----------------KQYTLEEFLDKNDHSLA 1306 fakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrkkk +a+++ s +++++ +v++++ ++r+eyLLCf+efgvfV+ +Grrsr++ KIAA0949 1307 PAVFAA-SSNSFPVSIVQVNSAGQREEYLLCFHEFGVFVDSYGRRSRTD- 1354 diselmWegaPesfayslypyllafhdngieIrsletgeltqeladrvqt +l+W + P +fay+ +pyl++ h+n++e+++++ +++ +++a++++ KIAA0949 1355 ---DLKWSRLPLAFAYR-EPYLFVTHFNSLEVIEIQARSSAGTPARAYLD 1400 illnkirllvslrsls<-* i++ ++ ++++++++ KIAA0949 1401 IPNPRYLGPAISSGAI 1416 //