hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17392117/chunk_1/iprscan-20080502-17392117.nocrc
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Query sequence: KIAA0948
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08368.2.fs FAST kinase-like protein, subdomain 2          142.2    2.2e-41   1
PF08368.2.ls FAST kinase-like protein, subdomain 2          144.1    3.5e-40   1
PF06743.5.ls FAST kinase-like protein, subdomain 1          113.0    8.1e-31   1
PF06743.5.fs FAST kinase-like protein, subdomain 1          111.0    3.1e-30   1
PF08373.1.fs RAP domain                                      62.2    2.5e-16   1
PF08373.1.ls RAP domain                                      64.0    4.4e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06743.5.fs   1/1     269   339 ..     1    75 []   111.0  3.1e-30
PF06743.5.ls   1/1     269   339 ..     1    75 []   113.0  8.1e-31
PF08368.2.fs   1/1     349   436 ..     1    95 []   142.2  2.2e-41
PF08368.2.ls   1/1     349   436 ..     1    95 []   144.1  3.5e-40
PF08373.1.fs   1/1     463   520 ..     1    70 []    62.2  2.5e-16
PF08373.1.ls   1/1     463   520 ..     1    70 []    64.0  4.4e-16

Alignments of top-scoring domains:
PF06743.5.fs: domain 1 of 1, from 269 to 339: score 111.0, E = 3.1e-30
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      ++++Ll+F+rLN++  P+++++Ffs++++kL +eL++l+  P+++++
    KIAA0948   269    LCSVLLAFARLNFH--PDQEDQFFSLVHEKLGSELPGLE--PALQVD 311  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   lvw+Lc+l++  e++l++Vl+p+F+ ++   
    KIAA0948   312 LVWALCVLQQAREAELQAVLHPEFHIQF    339  

PF06743.5.ls: domain 1 of 1, from 269 to 339: score 113.0, E = 8.1e-31
                   *->vaalLlpFgrLNYkykPpnkeeFfsklvqkLlreLhtlsqYPeslln
                      ++++Ll+F+rLN++  P+++++Ffs++++kL +eL++l+  P+++++
    KIAA0948   269    LCSVLLAFARLNFH--PDQEDQFFSLVHEKLGSELPGLE--PALQVD 311  

                   lvwSLclleyfPeellnkVlspdFlqrL<-*
                   lvw+Lc+l++  e++l++Vl+p+F+ ++   
    KIAA0948   312 LVWALCVLQQAREAELQAVLHPEFHIQF    339  

PF08368.2.fs: domain 1 of 1, from 349 to 436: score 142.2, E = 2.2e-41
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      ++++kLl++na+++LE+PeY gplLp++++ p++ ++l++k tpl  
    KIAA0948   349    NTFQKLLHINATALLEYPEYSGPLLPASAVAPGP-SALDRKVTPL-- 392  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                     qkel+e+  Lk+LLG++++++++v+t+yg+++D+Ev+LD++g++LP  
    KIAA0948   393 --QKELQET--LKGLLGSADKGSLEVATQYGWVLDAEVLLDSDGEFLP   436  

                   *
                    
    KIAA0948     -   -    

PF08368.2.ls: domain 1 of 1, from 349 to 436: score 144.1, E = 3.5e-40
                   *->rvrkkLlqLnaavkLEcPeYkgplLptryqvpqfpqplpkkrtplDs
                      ++++kLl++na+++LE+PeY gplLp++++ p++ ++l++k tpl  
    KIAA0948   349    NTFQKLLHINATALLEYPEYSGPLLPASAVAPGP-SALDRKVTPL-- 392  

                   ssqkellevyLLkeLLGgeqyfkhsvttPygytiDfEvvLDkngkpLP<-
                     qkel+e+  Lk+LLG++++++++v+t+yg+++D+Ev+LD++g++LP  
    KIAA0948   393 --QKELQET--LKGLLGSADKGSLEVATQYGWVLDAEVLLDSDGEFLP   436  

                   *
                    
    KIAA0948     -   -    

PF08373.1.fs: domain 1 of 1, from 463 to 520: score 62.2, E = 2.5e-16
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      ++ +++ +f++     +sk+l      +g+++l +R+  a+G+ ++ 
    KIAA0948   463    FLRWEFPNFNS-----RSKDL------LGRFVLARRHIVAAGFLIVD 498  

                   IpyyEWnkmlktelqKkeYlkkk<-*
                   +p+yEW+  lk+e+qK +Ylk+k   
    KIAA0948   499 VPFYEWLE-LKSEWQKGAYLKDK    520  

PF08373.1.ls: domain 1 of 1, from 463 to 520: score 64.0, E = 4.4e-16
                   *->IeidGpshfyrLinqanskslkydlintgntklKkRlLsalGykVIs
                      ++ +++ +f++     +sk+l      +g+++l +R+  a+G+ ++ 
    KIAA0948   463    FLRWEFPNFNS-----RSKDL------LGRFVLARRHIVAAGFLIVD 498  

                   IpyyEWnkmlktelqKkeYlkkk<-*
                   +p+yEW+  lk+e+qK +Ylk+k   
    KIAA0948   499 VPFYEWLE-LKSEWQKGAYLKDK    520  

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