hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17355101/chunk_1/iprscan-20080502-17355101.nocrc
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Query sequence: KIAA0946
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 136.9    2.2e-36   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/5     124   153 ..     1    30 []    21.5     0.12
SM00248    2/5     158   187 ..     1    30 []    29.9  0.00034
SM00248    3/5     191   220 ..     1    30 []    30.2  0.00029
SM00248    4/5     224   254 ..     1    30 []    20.0     0.34
SM00248    5/5     259   288 ..     1    30 []    35.2  8.6e-06

Alignments of top-scoring domains:
SM00248: domain 1 of 5, from 124 to 153: score 21.5, E = 0.12
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      ++ T LH+Aa n+++++vk+ ++kga ++    
    KIAA0946   124    ENVTLLHWAAINNRIDLVKYYISKGAIVDQ    153  

SM00248: domain 2 of 5, from 158 to 187: score 29.9, E = 0.00034
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       + TpLH+A + g+l++v  L+++gad+ +   
    KIAA0946   158    LNSTPLHWATRQGHLSMVVQLMKYGADPSL    187  

SM00248: domain 3 of 5, from 191 to 220: score 30.2, E = 0.00029
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G++++HlAa+ g+ ++v +L+ kg d+++   
    KIAA0946   191    EGCSCIHLAAQFGHTSIVAYLIAKGQDVDM    220  

SM00248: domain 4 of 5, from 224 to 254: score 20.0, E = 0.34
                   *->dGrTpLHlAaen.gnlevvklLldkgadina<-*
                      +G+TpL++Aa+++ +++  +lLl  ++++n+   
    KIAA0946   224    NGMTPLMWAAYRtHSVDPTRLLLTFNVSVNL    254  

SM00248: domain 5 of 5, from 259 to 288: score 35.2, E = 8.6e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + +T+LH+A+  gn  v+ lLl++ga+++a   
    KIAA0946   259    HKNTALHWAVLAGNTTVISLLLEAGANVDA    288  

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