hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17355101/chunk_1/iprscan-20080502-17355101.nocrc
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Query sequence: KIAA0946
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 149.0    1.2e-41   5
PF00023.20.fs Ankyrin repeat                                 139.0    1.2e-38   5
PF01529.11.fs DHHC zinc finger domain                        104.3    5.9e-29   1
PF01529.11.ls DHHC zinc finger domain                        105.9    1.1e-28   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/5     124   156 ..     1    33 []    17.6  0.00062
PF00023.20.ls   1/5     124   156 ..     1    33 []    19.6     0.01
PF00023.20.ls   2/5     158   190 ..     1    33 []    28.8  1.7e-05
PF00023.20.fs   2/5     158   190 ..     1    33 []    26.9  1.7e-06
PF00023.20.ls   3/5     191   223 ..     1    33 []    29.8  9.2e-06
PF00023.20.fs   3/5     191   223 ..     1    33 []    27.8  9.3e-07
PF00023.20.ls   4/5     224   257 ..     1    33 []    26.1  0.00012
PF00023.20.fs   4/5     224   257 ..     1    33 []    24.1    1e-05
PF00023.20.fs   5/5     259   291 ..     1    33 []    42.7  6.4e-11
PF00023.20.ls   5/5     259   291 ..     1    33 []    44.7  2.9e-10
PF01529.11.ls   1/1     468   527 ..     1    66 []   105.9  1.1e-28
PF01529.11.fs   1/1     471   527 ..     9    66 .]   104.3  5.9e-29

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 5, from 124 to 156: score 17.6, E = 0.00062
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  T LH+Aa+++++++vk+ +s+GA ++       
    KIAA0946   124    ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG    156  

PF00023.20.ls: domain 1 of 5, from 124 to 156: score 19.6, E = 0.01
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  T LH+Aa+++++++vk+ +s+GA ++       
    KIAA0946   124    ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG    156  

PF00023.20.ls: domain 2 of 5, from 158 to 190: score 28.8, E = 1.7e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                         TPLH+A + g+l++v  L+++GAd+ + d    
    KIAA0946   158    LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG    190  

PF00023.20.fs: domain 2 of 5, from 158 to 190: score 26.9, E = 1.7e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                         TPLH+A + g+l++v  L+++GAd+ + d    
    KIAA0946   158    LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG    190  

PF00023.20.ls: domain 3 of 5, from 191 to 223: score 29.8, E = 9.2e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G++++HlAa+ g++++v +L+ +G d+++ d    
    KIAA0946   191    EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ    223  

PF00023.20.fs: domain 3 of 5, from 191 to 223: score 27.8, E = 9.3e-07
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G++++HlAa+ g++++v +L+ +G d+++ d    
    KIAA0946   191    EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ    223  

PF00023.20.ls: domain 4 of 5, from 224 to 257: score 26.1, E = 0.00012
                   *->dGfTPLHlAalrg.nlevvklLlsqGAdlnaqdd<-*
                      +G+TPL++Aa+r ++++  +lLl    ++n+ d+   
    KIAA0946   224    NGMTPLMWAAYRThSVDPTRLLLTFNVSVNLGDK    257  

PF00023.20.fs: domain 4 of 5, from 224 to 257: score 24.1, E = 1e-05
                   *->dGfTPLHlAalrg.nlevvklLlsqGAdlnaqdd<-*
                      +G+TPL++Aa+r ++++  +lLl    ++n+ d+   
    KIAA0946   224    NGMTPLMWAAYRThSVDPTRLLLTFNVSVNLGDK    257  

PF00023.20.fs: domain 5 of 5, from 259 to 291: score 42.7, E = 6.4e-11
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +T+LH+A+l gn+ v++lLl++GA+++aq+    
    KIAA0946   259    HKNTALHWAVLAGNTTVISLLLEAGANVDAQNI    291  

PF00023.20.ls: domain 5 of 5, from 259 to 291: score 44.7, E = 2.9e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +T+LH+A+l gn+ v++lLl++GA+++aq+    
    KIAA0946   259    HKNTALHWAVLAGNTTVISLLLEAGANVDAQNI    291  

PF01529.11.ls: domain 1 of 1, from 468 to 527: score 105.9, E = 1.1e-28
                   *->ldndkfikdnfCskCnsyKVPpRShHCsvCnkCVlrmDHHCpWinnC
                      ld++     +fCs+C ++K P RS+HC vCn+C++++DHHCpW++nC
    KIAA0946   468    LDLS-----IFCSTCLIRK-PVRSKHCGVCNRCIAKFDHHCPWVGNC 508  

                   VGlrNyryFllFlfylill<-*
                   VG++N+ryF   lf+l+++   
    KIAA0946   509 VGAGNHRYFMGYLFFLLFM    527  

PF01529.11.fs: domain 1 of 1, from 471 to 527: score 104.3, E = 5.9e-29
                   *->dnfCskCnsyKVPpRShHCsvCnkCVlrmDHHCpWinnCVGlrNyry
                      ++fCs+C ++K P RS+HC vCn+C++++DHHCpW++nCVG++N+ry
    KIAA0946   471    SIFCSTCLIRK-PVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRY 516  

                   FllFlfylill<-*
                   F   lf+l+++   
    KIAA0946   517 FMGYLFFLLFM    527  

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