hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17341422/chunk_1/iprscan-20080502-17341422.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0945 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01426.8.fs BAH domain 46.4 3.6e-12 1 PF01426.8.ls BAH domain 40.2 6.4e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01426.8.fs 1/1 641 737 .. 1 115 [. 46.4 3.6e-12 PF01426.8.ls 1/1 641 796 .. 1 159 [] 40.2 6.4e-09 Alignments of top-scoring domains: PF01426.8.fs: domain 1 of 1, from 641 to 737: score 46.4, E = 3.6e-12 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeivelfe et++v D+Vl+ + + ++ ++yva+I + +e KIAA0945 641 ETIRVRDTVLLKSGP-----RK--------TSTPYVAKISAL---WE 671 dsdgskekmvhvrwfyRPeetPyikslgrafnkDirEvflsdecddvple ++ + e m ++ w+yRPe+ ++ + ++ + ++Evf+s+++d +++ KIAA0945 672 NPESG-ELMMSLLWYYRPEHL-QGGRSPSMHEPLQNEVFASRHQDQNSVA 719 diigkCeVlkksdpesls<-* +i++kC Vl ++++++ + KIAA0945 720 CIEEKCYVLTFAEYCRFC 737 PF01426.8.ls: domain 1 of 1, from 641 to 796: score 40.2, E = 6.4e-09 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeivelfe et++v D+Vl+ + + ++ ++yva+I + +e KIAA0945 641 ETIRVRDTVLLKSGP-----RK--------TSTPYVAKISAL---WE 671 dsdgskekmvhvrwfyRPeetPyikslgrafnkDirEvflsdecddvple ++ + e m ++ w+yRPe+ ++ + ++ + ++Evf+s+++d +++ KIAA0945 672 NPESG-ELMMSLLWYYRPEHL-QGGRSPSMHEPLQNEVFASRHQDQNSVA 719 diigkCeVlkksdpeslspeeinsnAdkldrarAERKkkgeedvF..... +i++kC Vl ++++++ + + k+++ ++++++ KIAA0945 720 CIEEKCYVLTFAEYCRFCAMA-----------------KRRGEGLpsrkt 752 ...........................fCellYdpekgsFkklp<-* +++ + +++++++ +++++++ +C+++Yd +g+ k p KIAA0945 753 alvppsadystpphrtvpedtdpelvfLCRHVYDFRHGRILKNP 796 //