hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17304816/chunk_1/iprscan-20080502-17304816.nocrc
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Query sequence: KIAA0944
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  29.8    0.00038   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2    1327  1466 ..     1    92 []    12.9      1.2
SM00382    2/2    1975  2123 ..     1    92 []    16.9     0.47

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 1327 to 1466: score 12.9, E = 1.2
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge...........
                       +   +  Gp G+GKT + + la+   + +++++++++ +    ++ 
    KIAA0944  1327    LHLGGAPEGPAGTGKTETTKDLAKAVAKQCVVFNCSdgldylalgkf 1373 

                   ..........................ggqrirlalalark..dvlllDEi
                    ++  + +     ++ ++ + +  +  +q+i  + + ++++ d+l +   
    KIAA0944  1374 fkgllscgawacfdefnridlevlsvVAQQILTIQRGINAgaDILMFEGT 1423 

                   tslld..vtviattn......dldpallrrrfdrrivl.lril<-*
                      ld  + v++t+n++  ++ ++p++l++ f+++ ++ ++     
    KIAA0944  1424 ELKLDptCAVFITMNpgyagrSELPDNLKALFRTVAMMvPDYA    1466 

SM00382: domain 2 of 2, from 1975 to 2123: score 16.9, E = 0.47
                   *->pgevvllvGppGsGKTTla.ralarllgp...gviyidge....ggq
                      + ++ ++vGp+G+GK++ +++ l+++l+++  + ++i+ + +   +q
    KIAA0944  1975    HQKPSIFVGPTGTGKSVYItNFLLNQLNKeiyKPLLINFSaqttAAQ 2021 

                   rirlalalark.............dvlllDEitslld.............
                    + +++ ++ k++++  +++ +++ v+++D++++ +++  + +   ++++
    KIAA0944  2022 TQNIVMSKLDKrrkgvfgpplgkrMVVFVDDVNMPARevygaqppiellr 2071 

                   .....................vtviattn..dldpallrrrfdrrivllr
                   + +++ +  ++++ +  ++ ++++++++ ++  ++ ++ +r  r++ + +
    KIAA0944  2072 qwldhwnwydlkdcsmiklvdIQIMCAMGppGGGRNPVTPRYMRHFNIIT 2121 

                   il<-*
                   i+   
    KIAA0944  2122 IN    2123 

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