hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17304816/chunk_1/iprscan-20080502-17304816.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0944 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.ls Dynein heavy chain 1488.6 0 1 PF03028.6.fs Dynein heavy chain 1486.8 0 1 PF08393.3.fs Dynein heavy chain, N-terminal region 2 636.7 2.4e-189 1 PF08393.3.ls Dynein heavy chain, N-terminal region 2 638.7 4.5e-189 1 PF07728.4.fs ATPase family associated with various ce 35.5 4e-10 5 PF07728.4.ls ATPase family associated with various ce 22.0 3.5e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08393.3.fs 1/1 761 1174 .. 1 427 [] 636.7 2.4e-189 PF08393.3.ls 1/1 761 1174 .. 1 427 [] 638.7 4.5e-189 PF07728.4.ls 2/3 1611 1762 .. 1 184 [] 14.3 0.00013 PF07728.4.ls 3/3 1978 2125 .. 1 184 [] 4.2 0.00079 PF00036.22.fs 1/1 2251 2279 .. 1 29 [] 18.1 0.00071 PF03028.6.fs 1/1 3319 4028 .. 1 783 [] 1486.8 0 PF03028.6.ls 1/1 3319 4028 .. 1 783 [] 1488.6 0 Alignments of top-scoring domains: PF08393.3.fs: domain 1 of 1, from 761 to 1174: score 636.7, E = 2.4e-189 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee p+ k++++ l+++ l+++ +e+ +++++w e+p++++ +p+++e + KIAA0944 761 PQRKKIQDGLNPYLRLYETAVEFSSNYRAWTEGPYHKV-NPDQVEAD 806 ldkllkqlrkLpkevrqyea.keafeklkqkiknfkkslpllqeLknpam ++++++ l+kL k+++++++ ++++k+++k+++fk+++pl+q ++np++ KIAA0944 807 IGNYWRGLYKLEKTFHDSPYaLAMTKKVRSKVEDFKQHIPLIQVICNPGL 856 keRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIv ++RHWe ++ i+g++ +s++ t++ +ld+nL + y++ ++ I+ KIAA0944 857 RPRHWEAMSAIVGYP-L-----QPSDDSTVSSFLDMNL-EPYIDRFEGIS 899 dqAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkGgwdelfekL ++A kE+++Eka++++ ++W +veF ++ Y++tg +++l+ ++de++++L KIAA0944 900 EAASKEYSLEKAMEKMITEWDAVEFVIHSYRETG-TFILA-SVDEIQMLL 947 eDnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWvYL +D++ ++q+M+ Sp++kp+e++ +eWe KL ll+eil++Wl+VQ++W+YL KIAA0944 948 DDHIIKTQTMRGSPFIKPYEKQMREWEGKLLLLQEILDEWLKVQATWLYL 997 EgIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnipgl E+IF +S DI++Q+PeE++RF ++Dk+++ M++v +d++Vl v++i+++ KIAA0944 998 EPIF-SSPDIMSQMPEEGRRFTAVDKTWRDTMRSVMQDKHVLTVVTIDRM 1046 leslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskd le+ L++ ne+Le++ K+LneYLE+KRl+FPRF+FlS+d+LLEIL+++kd KIAA0944 1047 LER-LKKSNELLELILKGLNEYLEKKRLFFPRFFFLSNDELLEILSETKD 1095 PtrvQkHLkKlFdgIasLefdedgkdktIvgmvSkEGEeVpfsnpvsieg PtrvQ+HLkK+F+gIa++ef e +I++m+S+EGE+V++ + +s+++ KIAA0944 1096 PTRVQPHLKKCFEGIAKVEFTETL---DITHMKSSEGEVVELIEIISTAK 1142 ap.pVEeWLneLedeMkaTLkellreaveayr<-* a+++VE+WL eLe+ M ++ ++++ +a +ay+ KIAA0944 1143 ARgQVEKWLVELERVMINSIHKVTGDATFAYT 1174 PF08393.3.ls: domain 1 of 1, from 761 to 1174: score 638.7, E = 4.5e-189 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee p+ k++++ l+++ l+++ +e+ +++++w e+p++++ +p+++e + KIAA0944 761 PQRKKIQDGLNPYLRLYETAVEFSSNYRAWTEGPYHKV-NPDQVEAD 806 ldkllkqlrkLpkevrqyea.keafeklkqkiknfkkslpllqeLknpam ++++++ l+kL k+++++++ ++++k+++k+++fk+++pl+q ++np++ KIAA0944 807 IGNYWRGLYKLEKTFHDSPYaLAMTKKVRSKVEDFKQHIPLIQVICNPGL 856 keRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIv ++RHWe ++ i+g++ +s++ t++ +ld+nL + y++ ++ I+ KIAA0944 857 RPRHWEAMSAIVGYP-L-----QPSDDSTVSSFLDMNL-EPYIDRFEGIS 899 dqAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkGgwdelfekL ++A kE+++Eka++++ ++W +veF ++ Y++tg +++l+ ++de++++L KIAA0944 900 EAASKEYSLEKAMEKMITEWDAVEFVIHSYRETG-TFILA-SVDEIQMLL 947 eDnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWvYL +D++ ++q+M+ Sp++kp+e++ +eWe KL ll+eil++Wl+VQ++W+YL KIAA0944 948 DDHIIKTQTMRGSPFIKPYEKQMREWEGKLLLLQEILDEWLKVQATWLYL 997 EgIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnipgl E+IF +S DI++Q+PeE++RF ++Dk+++ M++v +d++Vl v++i+++ KIAA0944 998 EPIF-SSPDIMSQMPEEGRRFTAVDKTWRDTMRSVMQDKHVLTVVTIDRM 1046 leslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskd le+ L++ ne+Le++ K+LneYLE+KRl+FPRF+FlS+d+LLEIL+++kd KIAA0944 1047 LER-LKKSNELLELILKGLNEYLEKKRLFFPRFFFLSNDELLEILSETKD 1095 PtrvQkHLkKlFdgIasLefdedgkdktIvgmvSkEGEeVpfsnpvsieg PtrvQ+HLkK+F+gIa++ef e +I++m+S+EGE+V++ + +s+++ KIAA0944 1096 PTRVQPHLKKCFEGIAKVEFTETL---DITHMKSSEGEVVELIEIISTAK 1142 ap.pVEeWLneLedeMkaTLkellreaveayr<-* a+++VE+WL eLe+ M ++ ++++ +a +ay+ KIAA0944 1143 ARgQVEKWLVELERVMINSIHKVTGDATFAYT 1174 PF07728.4.ls: domain 2 of 3, from 1611 to 1762: score 14.3, E = 0.00013 *->gvlLvGpPGtGKselaerlaealsg......qg.grplfyvqltrdt g+++vG+P GK+ + la al+ +++ + ++ +v+++++ KIAA0944 1611 GFMIVGEPFGGKTSAYRVLAGALNDicekglMEeNKVQITVLNPKSV 1657 teedLlgrrdiapllhGngttswvdgpLv...rAaryaretegslpeghi t +L g++d +w dg+L + rA +++t++ +++ KIAA0944 1658 TMGQLYGQFD-------SVSHEWSDGVLAvsfRAFA-SSVTPD---RKWL 1696 vvlDEinraspevlnaLlslLderrlllpdggelvkvapydklaergree ++++ ++ +++ ++++Ld+++ l ge+++ +p KIAA0944 1697 IFDGPVD---AVWIENMNTVLDDNKKLCLMSGEIIQMSPQ---------- 1733 ldlwklgrlihdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* ++li+ +++ +l+ +s+A+++R+ +++++p KIAA0944 1734 ------------MNLIF---EPM---DLEVASPATVSRCGMIYMEPH 1762 PF07728.4.ls: domain 3 of 3, from 1978 to 2125: score 4.2, E = 0.00079 *->gvlLvGpPGtGKs.elaerlaealsgqggrplfyvqltrdtteedLl + ++vGp+GtGKs ++ l+ l+++ ++++ + ++++tt+++ + KIAA0944 1978 PSIFVGPTGTGKSvYITNFLLNQLNKE-IYKPLLINFSAQTTAAQ-T 2022 grrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinra + + + + +++ g++ + +v++D++n+ KIAA0944 2023 QNIVM------SKLDKRRKGVFGPPLG----------KRMVVFVDDVNMP 2056 spevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrl +ev +a ++++ r +l+ +++ ++ ++ ++ KIAA0944 2057 AREVYGAQ-PPIELLRQWLDHWNWYDLKDC-SMIKLVD------------ 2092 ihdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* ++++ +++p++ +g+n++ + r F+++t+ KIAA0944 2093 ---IQIMCAMGPPG--GGRNPVTPRYMRHFNIITINEF 2125 PF00036.22.fs: domain 1 of 1, from 2251 to 2279: score 18.1, E = 0.00071 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ e+F+ +D D+DG ++ +++++++ KIAA0944 2251 DFHELFQRLDFDNDGMVEADDLRSLMFCD 2279 PF03028.6.fs: domain 1 of 1, from 3319 to 4028: score 1486.8, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk l+n+y+np+ +wl++++Wd+i+rL +l++F+ +++++++ + + Wk KIAA0944 3319 LDNPYANPC-TWLPQKSWDEICRLDDLPAFKTIRREFMRLK--DGWK 3362 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+yds++P ++e +P+eW+d k ++Fq++l++R+lRPD++++ KIAA0944 3363 KVYDSLEP-HHEVFPEEWED---------KANEFQRMLIIRCLRPDKVIP 3402 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk +l++F+++ L G++f+ep pp+dl+k+++ +S++++P++F+LSPGaDP++ KIAA0944 3403 MLQEFIINRL-GRAFIEP-PPFDLAKAFG-DSNCCAPLIFVLSPGADPMA 3449 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ ++k+A+++G ++G kl S+SLGQGQgp iA+k++e+A+k+G+WV+LQ KIAA0944 3450 ALLKFADDQG---YGGSKLSSLSLGQGQGP-IAMKMLEKAVKEGTWVVLQ 3495 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N+HLa+sW+ptLEK +e+l+ pe+tHpdFR++LT++p+p+ fP+++ KIAA0944 3496 NCHLATSWMPTLEKVCEELS-PESTHPDFRMWLTSYPSPN-----FPVSV 3539 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL Lqn++K+TNE+P+Gl+AN++r+y +DPI+d+ef+ +ckkp+efk+ll++L KIAA0944 3540 LQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCKKPEEFKKLLYGL 3589 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi CfFHA+VqERRkFGPlGWN++YEFNe+DLriSv++l+++L+++ KIAA0944 3590 CFFHALVQERRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQY------- 3632 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad +++P+eaLRY++Ge++YGGr+tDdwDrR+Lr++L++ff+pel++ n+d KIAA0944 3633 --EELPYEALRYMTGECNYGGRVTDDWDRRTLRSILNKFFNPELVE-NSD 3679 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg y++++ ++++f vPp++d+++Yiey+++ LP + +Pe+fG+++NA+I+ KIAA0944 3680 YKFDS---SGIYF-VPPSGDHKSYIEYTKT-LPLTPAPEIFGMNANADIT 3724 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd ++++et+ l++++l++Q+r+ag +g++ s+ +Evv++v++d KIAA0944 3725 KDQSETQLLFDNILLTQSRSAG----AGAK---SS-----DEVVNEVASD 3762 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir il klp ++Fd+e++m+++++++++++++VlvQE+ r+NkLlk+ir KIAA0944 3763 ILGKLP-----NNFDIEAAMRRYPTTYTQSMNTVLVQEMGRFNKLLKTIR 3807 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg +S++++++++kG+ +ms+dlEe+++s+ln ++P+ mW++ksyPslkpLg KIAA0944 3808 DSCVNIQKAIKGLAVMSTDLEEVVSSILNVKIPE--MWMGKSYPSLKPLG 3855 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv s+v+D+l+R+++Lq+W+e g+P+v+WLsGFF++Q+FLT+++Q++ KIAA0944 3856 SYVNDFLARLKFLQQWYEV------GPPPVFWLSGFFFTQAFLTGAQQNY 3899 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARk+++P+D L++d+eV+ e++e+++ pPedGv++hGLfL+GA W++k KIAA0944 3900 ARKYTIPIDLLGFDYEVM--EDKEYKH--PPEDGVFIHGLFLDGASWNRK 3945 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL ++ laes+pK+L++++PV+wlk++++ ++++++ y++P+Ykt++R+gvL KIAA0944 3946 IKKLAESHPKILYDTVPVMWLKPCKR-ADIPKRPSYVAPLYKTSERRGVL 3994 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* STTGHStn+v+++ L++++ p+++Wi +GVALl+q KIAA0944 3995 STTGHSTNFVIAMTLPSDQ--PKEHWIGRGVALLCQ 4028 PF03028.6.ls: domain 1 of 1, from 3319 to 4028: score 1488.6, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk l+n+y+np+ +wl++++Wd+i+rL +l++F+ +++++++ + + Wk KIAA0944 3319 LDNPYANPC-TWLPQKSWDEICRLDDLPAFKTIRREFMRLK--DGWK 3362 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+yds++P ++e +P+eW+d k ++Fq++l++R+lRPD++++ KIAA0944 3363 KVYDSLEP-HHEVFPEEWED---------KANEFQRMLIIRCLRPDKVIP 3402 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk +l++F+++ L G++f+ep pp+dl+k+++ +S++++P++F+LSPGaDP++ KIAA0944 3403 MLQEFIINRL-GRAFIEP-PPFDLAKAFG-DSNCCAPLIFVLSPGADPMA 3449 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ ++k+A+++G ++G kl S+SLGQGQgp iA+k++e+A+k+G+WV+LQ KIAA0944 3450 ALLKFADDQG---YGGSKLSSLSLGQGQGP-IAMKMLEKAVKEGTWVVLQ 3495 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N+HLa+sW+ptLEK +e+l+ pe+tHpdFR++LT++p+p+ fP+++ KIAA0944 3496 NCHLATSWMPTLEKVCEELS-PESTHPDFRMWLTSYPSPN-----FPVSV 3539 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL Lqn++K+TNE+P+Gl+AN++r+y +DPI+d+ef+ +ckkp+efk+ll++L KIAA0944 3540 LQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCKKPEEFKKLLYGL 3589 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi CfFHA+VqERRkFGPlGWN++YEFNe+DLriSv++l+++L+++ KIAA0944 3590 CFFHALVQERRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQY------- 3632 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad +++P+eaLRY++Ge++YGGr+tDdwDrR+Lr++L++ff+pel++ n+d KIAA0944 3633 --EELPYEALRYMTGECNYGGRVTDDWDRRTLRSILNKFFNPELVE-NSD 3679 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg y++++ ++++f vPp++d+++Yiey+++ LP + +Pe+fG+++NA+I+ KIAA0944 3680 YKFDS---SGIYF-VPPSGDHKSYIEYTKT-LPLTPAPEIFGMNANADIT 3724 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd ++++et+ l++++l++Q+r+ag +g++ s+ +Evv++v++d KIAA0944 3725 KDQSETQLLFDNILLTQSRSAG----AGAK---SS-----DEVVNEVASD 3762 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir il klp ++Fd+e++m+++++++++++++VlvQE+ r+NkLlk+ir KIAA0944 3763 ILGKLP-----NNFDIEAAMRRYPTTYTQSMNTVLVQEMGRFNKLLKTIR 3807 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg +S++++++++kG+ +ms+dlEe+++s+ln ++P+ mW++ksyPslkpLg KIAA0944 3808 DSCVNIQKAIKGLAVMSTDLEEVVSSILNVKIPE--MWMGKSYPSLKPLG 3855 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv s+v+D+l+R+++Lq+W+e g+P+v+WLsGFF++Q+FLT+++Q++ KIAA0944 3856 SYVNDFLARLKFLQQWYEV------GPPPVFWLSGFFFTQAFLTGAQQNY 3899 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARk+++P+D L++d+eV+ e++e+++ pPedGv++hGLfL+GA W++k KIAA0944 3900 ARKYTIPIDLLGFDYEVM--EDKEYKH--PPEDGVFIHGLFLDGASWNRK 3945 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL ++ laes+pK+L++++PV+wlk++++ ++++++ y++P+Ykt++R+gvL KIAA0944 3946 IKKLAESHPKILYDTVPVMWLKPCKR-ADIPKRPSYVAPLYKTSERRGVL 3994 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* STTGHStn+v+++ L++++ p+++Wi +GVALl+q KIAA0944 3995 STTGHSTNFVIAMTLPSDQ--PKEHWIGRGVALLCQ 4028 //