hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17290754/chunk_1/iprscan-20080502-17290754.nocrc
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Query sequence: KIAA0943
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF03416.9.ls  Peptidase family C54                      505.1   7.4e-149   1
PF03416.9.fs  Peptidase family C54                      503.5   2.2e-148   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF03416.9.fs    1/1      39   340 ..     1   423 []   503.5 2.2e-148
PF03416.9.ls    1/1      39   340 ..     1   423 []   505.1 7.4e-149

Alignments of top-scoring domains:
PF03416.9.fs: domain 1 of 1, from 39 to 340: score 503.5, E = 2.2e-148
                   *->esgleaFlsDvySRIWfTYRrgFppIARdkDspaslalaLlvrikdf
                       +++ ++lsDv+SR+WfTYR+ Fp+I                     
    KIAA0943    39    FTEKDEILSDVASRLWFTYRKNFPAI--------------------- 64   

                   iagdtglTtDcGWGCMlRtGQMLLAqALiilhLGRdWrwprekrshvAas
                     g+tg+T+D+GWGCMlR+GQM++AqAL ++hLGRdWrw+ +k       
    KIAA0943    65 --GGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRK------- 105  

                   ddeddfdkedeeykkIlawFgDssSpdapFSIHqlVqmGaslcGKkapGe
                          ++++ y  +l+ F D+  +d+ +SIHq++qmG+ + GK+ +G+
    KIAA0943   106 -------RQPDSYFSVLNAFIDR--KDSYYSIHQIAQMGVGE-GKS-IGQ 144  

                   WfGPnavarilkkLvkedaerhpdwsglavyValDgtvvydDivekcnns
                   W+GPn+va++lkkL+ +d     +ws+lav+ a+D+tvv ++i ++c   
    KIAA0943   145 WYGPNTVAQVLKKLAVFD-----TWSSLAVHIAMDNTVVMEEIRRLC--- 186  

                   ntedavklIqqklqllrekrkirkNldknvkylkpvkfvgapvlaidfat
                                                          +++v++     
    KIAA0943   187 ---------------------------------------RTSVPC----- 192  

                   nsnqdknsraesgkneqV..............gqseWkplLLLiPlRLGi
                   ++  +++        ++ ++ ++ + + + ++ +s W+pl LLiPlRLG+
    KIAA0943   193 AGATAFPA-------DSDrhcngfpagaevtnRPSPWRPLVLLIPLRLGL 235  

                   dkiNpvYieaLkellslpqSvGIiGGkPnqSlYFvGfqgDeliYLDPHyv
                   ++iN+ Y+e Lk ++ +pqS+G iGGkPn+++YF+G++g eliYLDPH++
    KIAA0943   236 TDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTT 285  

                   QeavdvnqkdfpadddsdkkkdkkaaeleelvklwiQiadvttktddeed
                   Q+av+++   f   d                                   
    KIAA0943   286 QPAVEPTDGCFI-PD----------------------------------- 299  

                   eTyHcksl.rklsfsdMDPSlaiGFlCrdedDFdnlcerlk<-*
                   e++Hc++++ ++s+ ++DPS a+GF+C++edDF+++c ++k   
    KIAA0943   300 ESFHCQHPpCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVK    340  

PF03416.9.ls: domain 1 of 1, from 39 to 340: score 505.1, E = 7.4e-149
                   *->esgleaFlsDvySRIWfTYRrgFppIARdkDspaslalaLlvrikdf
                       +++ ++lsDv+SR+WfTYR+ Fp+I                     
    KIAA0943    39    FTEKDEILSDVASRLWFTYRKNFPAI--------------------- 64   

                   iagdtglTtDcGWGCMlRtGQMLLAqALiilhLGRdWrwprekrshvAas
                     g+tg+T+D+GWGCMlR+GQM++AqAL ++hLGRdWrw+ +k       
    KIAA0943    65 --GGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRK------- 105  

                   ddeddfdkedeeykkIlawFgDssSpdapFSIHqlVqmGaslcGKkapGe
                          ++++ y  +l+ F D+  +d+ +SIHq++qmG+ + GK+ +G+
    KIAA0943   106 -------RQPDSYFSVLNAFIDR--KDSYYSIHQIAQMGVGE-GKS-IGQ 144  

                   WfGPnavarilkkLvkedaerhpdwsglavyValDgtvvydDivekcnns
                   W+GPn+va++lkkL+ +d     +ws+lav+ a+D+tvv ++i ++c   
    KIAA0943   145 WYGPNTVAQVLKKLAVFD-----TWSSLAVHIAMDNTVVMEEIRRLC--- 186  

                   ntedavklIqqklqllrekrkirkNldknvkylkpvkfvgapvlaidfat
                                                          +++v++     
    KIAA0943   187 ---------------------------------------RTSVPC----- 192  

                   nsnqdknsraesgkneqV..............gqseWkplLLLiPlRLGi
                   ++  +++        ++ ++ ++ + + + ++ +s W+pl LLiPlRLG+
    KIAA0943   193 AGATAFPA-------DSDrhcngfpagaevtnRPSPWRPLVLLIPLRLGL 235  

                   dkiNpvYieaLkellslpqSvGIiGGkPnqSlYFvGfqgDeliYLDPHyv
                   ++iN+ Y+e Lk ++ +pqS+G iGGkPn+++YF+G++g eliYLDPH++
    KIAA0943   236 TDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTT 285  

                   QeavdvnqkdfpadddsdkkkdkkaaeleelvklwiQiadvttktddeed
                   Q+av+++   f   d                                   
    KIAA0943   286 QPAVEPTDGCFI-PD----------------------------------- 299  

                   eTyHcksl.rklsfsdMDPSlaiGFlCrdedDFdnlcerlk<-*
                   e++Hc++++ ++s+ ++DPS a+GF+C++edDF+++c ++k   
    KIAA0943   300 ESFHCQHPpCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVK    340  

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