# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/bm03784.fasta.nr -Q ../query/KIAA0943.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0943, 396 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827010 sequences Expectation_n fit: rho(ln(x))= 4.7996+/-0.000179; mu= 12.5422+/- 0.010 mean_var=63.9025+/-12.292, 0's: 36 Z-trim: 44 B-trim: 0 in 0/66 Lambda= 0.160441 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|194381088|dbj|BAG64112.1| unnamed protein produ ( 510) 2767 649.1 6.3e-184 gi|88192732|pdb|2D1I|A Chain A, Structure Of Human ( 398) 2756 646.5 3.1e-183 gi|61212253|sp|Q9Y4P1.1|ATG4B_HUMAN RecName: Full= ( 393) 2748 644.6 1.1e-182 gi|78101773|pdb|2CY7|A Chain A, The Crystal Struct ( 396) 2748 644.6 1.1e-182 gi|62822370|gb|AAY14919.1| unknown [Homo sapiens] ( 393) 2739 642.5 4.6e-182 gi|90077212|dbj|BAE88286.1| unnamed protein produc ( 393) 2727 639.8 3.2e-181 gi|18181958|dbj|BAB83890.1| Apg4B [Homo sapiens] ( 392) 2722 638.6 7.1e-181 gi|149711769|ref|XP_001497815.1| PREDICTED: simila ( 393) 2637 618.9 5.9e-175 gi|61211813|sp|Q8BGE6.2|ATG4B_MOUSE RecName: Full= ( 393) 2621 615.2 7.7e-174 gi|26324650|dbj|BAC26079.1| unnamed protein produc ( 393) 2616 614.1 1.7e-173 gi|20071131|gb|AAH27184.1| Autophagy-related 4B (y ( 393) 2615 613.8 2e-173 gi|34531319|dbj|BAC86110.1| unnamed protein produc ( 468) 2608 612.3 7.1e-173 gi|119591684|gb|EAW71278.1| ATG4 autophagy related ( 415) 2598 609.9 3.2e-172 gi|148707985|gb|EDL39932.1| autophagy-related 4B ( ( 390) 2595 609.2 5e-172 gi|73994337|ref|XP_851977.1| PREDICTED: similar to ( 394) 2595 609.2 5e-172 gi|169162934|ref|XP_001126088.2| PREDICTED: simila ( 405) 2594 609.0 6e-172 gi|30410798|ref|NP_847896.1| APG4 autophagy 4 homo ( 380) 2589 607.8 1.3e-171 gi|14042685|dbj|BAB55353.1| unnamed protein produc ( 380) 2585 606.9 2.4e-171 gi|61211780|sp|Q6PZ03.1|ATG4B_BOVIN RecName: Full= ( 393) 2517 591.1 1.4e-166 gi|149244060|pdb|2Z0D|A Chain A, The Crystal Struc ( 357) 2478 582.1 6.6e-164 gi|149411457|ref|XP_001513122.1| PREDICTED: hypoth ( 528) 2413 567.2 3e-159 gi|126338580|ref|XP_001366892.1| PREDICTED: simila ( 396) 2396 563.1 3.7e-158 gi|61211779|sp|Q6PZ02.1|ATG4B_CHICK RecName: Full= ( 393) 2345 551.3 1.3e-154 gi|194389756|dbj|BAG60394.1| unnamed protein produ ( 379) 2342 550.6 2.1e-154 gi|119591686|gb|EAW71280.1| ATG4 autophagy related ( 354) 2238 526.5 3.5e-147 gi|221045722|dbj|BAH14538.1| unnamed protein produ ( 319) 2236 526.0 4.4e-147 gi|194384462|dbj|BAG59391.1| unnamed protein produ ( 319) 2221 522.6 4.9e-146 gi|119591685|gb|EAW71279.1| ATG4 autophagy related ( 331) 2091 492.5 5.7e-137 gi|149037474|gb|EDL91905.1| autophagy-related 4B ( ( 319) 2089 492.0 7.7e-137 gi|14042153|dbj|BAB55127.1| unnamed protein produc ( 331) 2068 487.2 2.3e-135 gi|114584367|ref|XP_001162556.1| PREDICTED: simila ( 306) 2057 484.6 1.3e-134 gi|141795460|gb|AAI34887.1| Atg4b protein [Danio r ( 394) 2043 481.4 1.5e-133 gi|61211768|sp|Q6DG88.2|ATG4B_DANRE RecName: Full= ( 394) 2039 480.5 2.8e-133 gi|50369556|gb|AAH76463.1| Atg4b protein [Danio re ( 393) 2032 478.9 8.5e-133 gi|45861658|gb|AAS78582.1| Aut2B1 [Bos taurus] ( 342) 2023 476.8 3.2e-132 gi|209147572|gb|ACI32896.1| Cysteine protease ATG4 ( 397) 1998 471.0 2e-130 gi|53132082|emb|CAG31871.1| hypothetical protein [ ( 343) 1912 451.1 1.8e-124 gi|90080692|dbj|BAE89827.1| unnamed protein produc ( 263) 1817 429.0 5.9e-118 gi|14041938|dbj|BAB55042.1| unnamed protein produc ( 280) 1728 408.4 9.9e-112 gi|151554833|gb|AAI47963.1| ATG4 autophagy related ( 398) 1516 359.4 7.7e-97 gi|61211756|sp|Q5ZIW7.1|ATG4A_CHICK RecName: Full= ( 380) 1514 359.0 1e-96 gi|61211781|sp|Q6PZ05.1|ATG4A_BOVIN RecName: Full= ( 398) 1511 358.3 1.7e-96 gi|115291929|gb|AAI21871.1| Cysteine endopeptidase ( 384) 1509 357.8 2.3e-96 gi|61211859|sp|Q8WYN0.1|ATG4A_HUMAN RecName: Full= ( 398) 1507 357.4 3.3e-96 gi|61211744|sp|Q5R699.1|ATG4A_PONAB RecName: Full= ( 398) 1507 357.4 3.3e-96 gi|119623100|gb|EAX02695.1| ATG4 autophagy related ( 402) 1507 357.4 3.3e-96 gi|109131850|ref|XP_001097251.1| PREDICTED: simila ( 398) 1505 356.9 4.5e-96 gi|126342064|ref|XP_001376474.1| PREDICTED: hypoth ( 404) 1505 356.9 4.5e-96 gi|15487240|emb|CAC69076.1| putative autophagy-rel ( 398) 1504 356.7 5.3e-96 gi|210094266|gb|EEA42451.1| hypothetical protein B ( 402) 1502 356.2 7.3e-96 >>gi|194381088|dbj|BAG64112.1| unnamed protein product [ (510 aa) initn: 2767 init1: 2767 opt: 2767 Z-score: 3458.3 bits: 649.1 E(): 6.3e-184 Smith-Waterman score: 2767; 100.000% identity (100.000% similar) in 396 aa overlap (1-396:115-510) 10 20 30 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVW :::::::::::::::::::::::::::::: gi|194 RHTYWPPRRPVAASRCWPVGATPLGSVGGRTGKMDAATLTYDTLRFAEFEDFPETSEPVW 90 100 110 120 130 140 40 50 60 70 80 90 KIAA09 ILGRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ILGRKYSIFTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQAL 150 160 170 180 190 200 100 110 120 130 140 150 KIAA09 VCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNT 210 220 230 240 250 260 160 170 180 190 200 210 KIAA09 VAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFP 270 280 290 300 310 320 220 230 240 250 260 270 KIAA09 AGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AGAEVTNRPSPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFI 330 340 350 360 370 380 280 290 300 310 320 330 KIAA09 GYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTED 390 400 410 420 430 440 340 350 360 370 380 390 KIAA09 DFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLERFFDSEDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSLDSSDVERLERFFDSEDED 450 460 470 480 490 500 KIAA09 FEILSL :::::: gi|194 FEILSL 510 >>gi|88192732|pdb|2D1I|A Chain A, Structure Of Human Atg (398 aa) initn: 2756 init1: 2756 opt: 2756 Z-score: 3446.0 bits: 646.5 E(): 3.1e-183 Smith-Waterman score: 2756; 99.747% identity (100.000% similar) in 395 aa overlap (2-396:4-398) 10 20 30 40 50 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYR :.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 GPLGSMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYR 10 20 30 40 50 60 60 70 80 90 100 110 KIAA09 KNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 KNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAF 70 80 90 100 110 120 120 130 140 150 160 170 KIAA09 IDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 IDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVV 130 140 150 160 170 180 180 190 200 210 220 230 KIAA09 MEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 MEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDI 190 200 210 220 230 240 240 250 260 270 280 290 KIAA09 NEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 NEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIP 250 260 270 280 290 300 300 310 320 330 340 350 KIAA09 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQ 310 320 330 340 350 360 360 370 380 390 KIAA09 PSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::::: gi|881 PSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 370 380 390 >>gi|61212253|sp|Q9Y4P1.1|ATG4B_HUMAN RecName: Full=Cyst (393 aa) initn: 2748 init1: 2748 opt: 2748 Z-score: 3436.1 bits: 644.6 E(): 1.1e-182 Smith-Waterman score: 2748; 100.000% identity (100.000% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|612 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|78101773|pdb|2CY7|A Chain A, The Crystal Structure (396 aa) initn: 2748 init1: 2748 opt: 2748 Z-score: 3436.0 bits: 644.6 E(): 1.1e-182 Smith-Waterman score: 2748; 100.000% identity (100.000% similar) in 393 aa overlap (4-396:4-396) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 GPHMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 60 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID 70 80 90 100 110 120 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 130 140 150 160 170 180 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE 190 200 210 220 230 240 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE 250 260 270 280 290 300 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|781 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 310 320 330 340 350 360 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|781 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 370 380 390 >>gi|62822370|gb|AAY14919.1| unknown [Homo sapiens] (393 aa) initn: 2739 init1: 2739 opt: 2739 Z-score: 3424.8 bits: 642.5 E(): 4.6e-182 Smith-Waterman score: 2739; 99.746% identity (99.746% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: gi|628 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVELQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|628 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|90077212|dbj|BAE88286.1| unnamed protein product [M (393 aa) initn: 2727 init1: 2727 opt: 2727 Z-score: 3409.8 bits: 639.8 E(): 3.2e-181 Smith-Waterman score: 2727; 99.237% identity (99.746% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN :::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|900 MDAATLTYDTLRFAEYEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::::: .:::::: gi|900 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTGSCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|900 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|18181958|dbj|BAB83890.1| Apg4B [Homo sapiens] (392 aa) initn: 2720 init1: 1787 opt: 2722 Z-score: 3403.6 bits: 638.6 E(): 7.1e-181 Smith-Waterman score: 2722; 99.491% identity (99.746% similar) in 393 aa overlap (4-396:1-392) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|181 RKDSYYSIHQIAQMGVGE-KSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|181 SFHCQHPPCRMSIANLDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|181 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|149711769|ref|XP_001497815.1| PREDICTED: similar to (393 aa) initn: 2637 init1: 2637 opt: 2637 Z-score: 3297.2 bits: 618.9 E(): 5.9e-175 Smith-Waterman score: 2637; 95.929% identity (98.473% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN : :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MYCATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|149 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFID 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|149 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE .::::::.:.:::::.:::::::::::::::::::::::.:::::::::::::::::::: gi|149 DIRRLCRSSLPCAGAAAFPADSDRHCNGFPAGAEVTNRPAPWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::.:::::::::::::::::::::::::::::::::::::::::: ::.:::::: gi|149 AYVETLKRCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEFTDSCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::: ::::.::::::::::::::::::::::::: ::::::::::::::::::: gi|149 SFHCQHPPSRMSIGELDPSIAVGFFCKTEDDFNDWCQQVTMLSLLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::::::::::::::::::::::::::::::::::: gi|149 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|61211813|sp|Q8BGE6.2|ATG4B_MOUSE RecName: Full=Cyst (393 aa) initn: 2621 init1: 2621 opt: 2621 Z-score: 3277.2 bits: 615.2 E(): 7.7e-174 Smith-Waterman score: 2621; 95.165% identity (98.728% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|612 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::.: gi|612 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLD 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|612 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::...:::::.:.:.::.::::::::::::::::: ::::::::::::::::::: gi|612 EIRRLCRANLPCAGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::: ::.:::::: gi|612 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::: ::.:.:::::::::::::::.::::::::::::: :::::::::::::::: gi|612 SFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::: ::::::::::::::::::::::::::::::: gi|612 HLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 >>gi|26324650|dbj|BAC26079.1| unnamed protein product [M (393 aa) initn: 2616 init1: 2616 opt: 2616 Z-score: 3270.9 bits: 614.1 E(): 1.7e-173 Smith-Waterman score: 2616; 94.911% identity (98.728% similar) in 393 aa overlap (4-396:1-393) 10 20 30 40 50 60 KIAA09 TGKMDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|263 MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRN 10 20 30 40 50 70 80 90 100 110 120 KIAA09 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFID ::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::.: gi|263 FPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFNVLNAFLD 60 70 80 90 100 110 130 140 150 160 170 180 KIAA09 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 RKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVME 120 130 140 150 160 170 190 200 210 220 230 240 KIAA09 EIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLIPLRLGLTDINE :::::::...::.::.:.:.::.::::::::::::::::: ::::::::::::::::::: gi|263 EIRRLCRANLPCVGAAALPTDSERHCNGFPAGAEVTNRPSAWRPLVLLIPLRLGLTDINE 180 190 200 210 220 230 250 260 270 280 290 300 KIAA09 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDE :::::::::::::::::::::::::::::::::::::::::::::::::: ::.:::::: gi|263 AYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDE 240 250 260 270 280 290 310 320 330 340 350 360 KIAA09 SFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPS :::::::: ::.:.:::::::::::::::.::::::::::::: :::::::::::::::: gi|263 SFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPS 300 310 320 330 340 350 370 380 390 KIAA09 HLACPDVLNLSLDSSDVERLERFFDSEDEDFEILSL :::: ::::::::::::::::::::::::::::::: gi|263 HLACQDVLNLSLDSSDVERLERFFDSEDEDFEILSL 360 370 380 390 396 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Fri Mar 6 07:43:55 2009 done: Fri Mar 6 07:48:46 2009 Total Scan time: 1483.960 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]