hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17222580/chunk_1/iprscan-20080502-17222580.nocrc
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Query sequence: KIAA0939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00840 b_cpa1: sodium/hydrogen exchanger 3            221.0    8.9e-64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00840   1/1      67   590 ..     1   627 []   221.0  8.9e-64

Alignments of top-scoring domains:
TIGR00840: domain 1 of 1, from 67 to 590: score 221.0, E = 8.9e-64
                   *->dyehvqkPyeivLwILLaSLaKigfHLthkvlrvvPESvLLIvyGll
                       +e  +   ++  ++ La     +  L+  +l+ +PESv  + +G+l
    KIAA0939    67    QEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGIL 113  

                   vGgiikaldhHYI...idpptLdsslFFlyLLPPIVLdAGYfmpkreFfe
                   +G +ik      + + +    + + +FFl LLPPI+ ++GY++ k +Ff 
    KIAA0939   114 MGAVIKIIEFKKLanwKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQ 163  

                   NLgsILlFAvvGTlinAfvlGlsLYgIcliggfgsidIgLLdnLlFGslI
                   N+gsI lFAv GT i+Afv+G+  Y  +l  +  + + +  d + FGslI
    KIAA0939   164 NIGSITLFAVFGTAISAFVVGGGIY--FLGQADVISKLNMTDSFAFGSLI 211  

                   SAVDPVaVLavFeElhVnekLyilIFGESLLNDAVtvVLYntfekFiklS
                   SAVDPVa  a+F++lhV+++L +l+FGES LNDAV++VL nt e  +   
    KIAA0939   212 SAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTNTAEGLTR-- 259  

                   DasdeavtivdvveGcvsfFv.vtlGvGlLvGVvfGflvafitrfTkhir
                        +v +   ++  +  F+++ +G +   G + G ++a+++++   ++
    KIAA0939   260 -KNMSDVSGWQTFLQALDYFLkMFFG-SAALGTLTGLISALVLKHIDLRK 307  

                   YPvIEPlfvllisYlSYLlAEtlhlSGILAlifCGitmkkYveaNiSreS
                    P  E ++   ++Yl Y lAE+ +lSGI+A++f+Gi+m++Y   N S   
    KIAA0939   308 TPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVT 357  

                   etTikYfmKmlsSlSEtlIFifLGvSlVsenhewnwplaFvvvTlvfCvA
                   ++    ++++ + l Et+ F fLG+S +s  h +     Fv+  +v  + 
    KIAA0939   358 QILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEI--SFVIWCIVLVL- 404  

                   RWCAVFPLSQFVNWiYRvlgvltLswilNeFrSvkvelpfkDQlvifyaG
                                   R+  ++ Ls+ lN Fr    ++++k  +++ ++G
    KIAA0939   405 --------------FGRAVNIFPLSYLLNFFR--DHKITPKMMFIMWFSG 438  

                   lRGAVafaLallldekifpaKklFvtTtLvVvffTVIfQGlTIkplvevL
                   lRGA+ +aL l ld+   +   l  tTt+v+v fT  + G+ + pl+++ 
    KIAA0939   439 LRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLM 488  

                   kvkkddkskekinEelhlrllDHllpgIEDicGqygHdklidKlnkfdkk
                   ++                                  H + ++  n     
    KIAA0939   489 DIEDAKA-----------------------------HRRNKKDVN----- 504  

                   ylkkvlirrnspkssikivavyhklnlkqaIslveeGerrkllsfvgtnS
                    l+k +  +n   s    ++   + ++  a    +      l  fv +  
    KIAA0939   505 -LSKTEKMGNTVES--EHLSELTE-EEYEAHYIRRQD----LKGFVWL-- 544  

                   tdNivnvDFstPepsnsepivsYFLREnvsAvglpalSsedkeeeiRdtE
                          D     p  +++                  ++   +    +  
    KIAA0939   545 -------DAKYLNPFFTRRL--------------TQEDLHHGR-IQMK-- 570  

                   DmvtHHiLstnlykprQrlqsrYsrhvLkpvpnE<-*
                         +L++  y  +    s          +++   
    KIAA0939   571 ------TLTNKWYEEVRQGPS--------GSEDD    590  

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