hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17222580/chunk_1/iprscan-20080502-17222580.nocrc
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Query sequence: KIAA0939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00999.11.ls  Sodium/hydrogen exchanger family         255.7      9e-74   1
PF00999.11.fs  Sodium/hydrogen exchanger family         253.8    3.2e-73   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00999.11.fs    1/1      76   487 ..     1   450 []   253.8  3.2e-73
PF00999.11.ls    1/1      76   487 ..     1   450 []   255.7    9e-74

Alignments of top-scoring domains:
PF00999.11.fs: domain 1 of 1, from 76 to 487: score 253.8, E = 3.2e-73
                   *->avillvlallaglvfllarrlgp..lPpvvglilaGillGpsglglq
                      +++ l+++++++++ +l+ r + + lP++v+ + +Gil+G       
    KIAA0939    76    IFFSLLVLAICIILVHLLIRYRLhfLPESVAVVSLGILMGAVIKI-- 120  

                   immflpvepdlslkvealfpadveldlevlaelGlilLlFlaGleldlre
                       + ++        a ++ + ++ + +++ l+l++++F++G+ l+   
    KIAA0939   121 ----IEFKKL------ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGN 160  

                   lrkngksilllallgvllpflliGlllallllglalfl.gllvlgiplle
                   +++n++si+l+a++g++++++++G+++++         +  ++  + +++
    KIAA0939   161 FFQNIGSITLFAVFGTAISAFVVGGGIYF-------LGqADVISKLNMTD 203  

                   alffGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDavavvlLa
                   ++ fG+++sa++pv+++ai+    +++  l  l++ges+lnDav++vl +
    KIAA0939   204 SFAFGSLISAVDPVATIAIF-NALHVDPVLNMLVFGESILNDAVSIVLTN 252  

                   vllalasegggevgglsdlglllliflvvalgglllglvfpwllrlitrf
                    +++l++++ + v+g+ +++ +l  fl  ++g+ +lg + +++++l+ ++
    KIAA0939   253 TAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKH 302  

                   tdfrgydgdrelevllvlalallaallaellGlsgilGaFlaGlvlsrln
                   +d+r+   ++ le+   +++a+l ++lae + lsgi++ ++ G+v+s  +
    KIAA0939   303 IDLRK---TPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMS--H 347  

                   yafaneklseksrt.lepfgymlsglfiplFFvlvGlsldlsvllfdalg
                   y ++n  ls  ++  + ++  ++++l++++ F+++Gls++          
    KIAA0939   348 YTHHN--LSPVTQIlMQQTLRTVAFLCETCVFAFLGLSIF---------- 385  

                   prgtss.hlsllllvllllvaillgKllgvfllarllnkFrrgklslrea
                       s++h + + +v+  +v++l+g+++ +f+l++lln+Fr++k++ +  
    KIAA0939   386 ----SFpHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMM 431  

                   livgllllqRGavalalaaiglqlgglidreliytllvivvllttlvqGl
                   +i+++++l RGa++ al +   ++     r+li t+++++vl+t+l+ G+
    KIAA0939   432 FIMWFSGL-RGAIPYALSLHLDLE-PMEKRQLIGTTTIVIVLFTILLLGG 479  

                   tlkpllkk<-*
                   ++ pl++    
    KIAA0939   480 STMPLIRL    487  

PF00999.11.ls: domain 1 of 1, from 76 to 487: score 255.7, E = 9e-74
                   *->avillvlallaglvfllarrlgp..lPpvvglilaGillGpsglglq
                      +++ l+++++++++ +l+ r + + lP++v+ + +Gil+G       
    KIAA0939    76    IFFSLLVLAICIILVHLLIRYRLhfLPESVAVVSLGILMGAVIKI-- 120  

                   immflpvepdlslkvealfpadveldlevlaelGlilLlFlaGleldlre
                       + ++        a ++ + ++ + +++ l+l++++F++G+ l+   
    KIAA0939   121 ----IEFKKL------ANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGN 160  

                   lrkngksilllallgvllpflliGlllallllglalfl.gllvlgiplle
                   +++n++si+l+a++g++++++++G+++++         +  ++  + +++
    KIAA0939   161 FFQNIGSITLFAVFGTAISAFVVGGGIYF-------LGqADVISKLNMTD 203  

                   alffGaalsatspvvvlaiLkergrlntrlgtlilgesvlnDavavvlLa
                   ++ fG+++sa++pv+++ai+    +++  l  l++ges+lnDav++vl +
    KIAA0939   204 SFAFGSLISAVDPVATIAIF-NALHVDPVLNMLVFGESILNDAVSIVLTN 252  

                   vllalasegggevgglsdlglllliflvvalgglllglvfpwllrlitrf
                    +++l++++ + v+g+ +++ +l  fl  ++g+ +lg + +++++l+ ++
    KIAA0939   253 TAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKH 302  

                   tdfrgydgdrelevllvlalallaallaellGlsgilGaFlaGlvlsrln
                   +d+r+   ++ le+   +++a+l ++lae + lsgi++ ++ G+v+s  +
    KIAA0939   303 IDLRK---TPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMS--H 347  

                   yafaneklseksrt.lepfgymlsglfiplFFvlvGlsldlsvllfdalg
                   y ++n  ls  ++  + ++  ++++l++++ F+++Gls++          
    KIAA0939   348 YTHHN--LSPVTQIlMQQTLRTVAFLCETCVFAFLGLSIF---------- 385  

                   prgtss.hlsllllvllllvaillgKllgvfllarllnkFrrgklslrea
                       s++h + + +v+  +v++l+g+++ +f+l++lln+Fr++k++ +  
    KIAA0939   386 ----SFpHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMM 431  

                   livgllllqRGavalalaaiglqlgglidreliytllvivvllttlvqGl
                   +i+++++l RGa++ al +   ++     r+li t+++++vl+t+l+ G+
    KIAA0939   432 FIMWFSGL-RGAIPYALSLHLDLE-PMEKRQLIGTTTIVIVLFTILLLGG 479  

                   tlkpllkk<-*
                   ++ pl++    
    KIAA0939   480 STMPLIRL    487  

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