hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17172996/chunk_1/iprscan-20080502-17172996.nocrc
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Query sequence: KIAA0936
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 354.3   7.6e-102   1
SM00219                                                  45.1    6.3e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      12   292 ..     1   280 []    45.1  6.3e-14
SM00220    1/1      12   292 ..     1   231 []   354.3 7.6e-102

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 12 to 292: score 45.1, E = 6.3e-14
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       t +++LG G +G V +G+ +++++  A+K++k    + ++ + lrE
    KIAA0936    12    YTTIRQLGDGTYGSVLLGRSIesgELIAIKKMKRKFysweECMNLRE 58   

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                    k +kkl  +H N+VkL  v++e        + l+ ++Eym+  +L + +
    KIAA0936    59 VKSLKKL--NHANVVKLKEVIREN-------DHLYFIFEYMKE-NLYQLI 98   

                   rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvK
                   +++ + ++ s   ++++QI +G +++++++f HRDL   N L   +  vK
    KIAA0936    99 KERNKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPELVK 148  

                   IsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWm.APEsl.kdg
                   I+DFGL+R++ ++         Y+          +  rW++APE+l +  
    KIAA0936   149 IADFGLAREIRSK-------PPYT------DY--VSTRWYrAPEVLlRST 183  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqq..fmsneevleylkkGyR
                    ++s  DVW+ G  + E++tl  +  pg    ++  + + + + l + + 
    KIAA0936   184 NYSSPIDVWAVGCIMAEVYTL-RPLFPG---AseIDTIFKICQVLGTPKK 229  

                   lpkPendlpiS.....................svtCPdelYdlMlqCWae
                    + Pe      + ++  + + ++  +++ ++  + +++e  +l ++  + 
    KIAA0936   230 TDWPEG----YqlssamnfrwpqcvpnnlktlIPNASSEAVQLLRDMLQW 275  

                   dPedRPtFsel..verl<-*
                   dP++RPt s+  ++ ++   
    KIAA0936   276 DPKKRPTASQAlrYPYF    292  

SM00220: domain 1 of 1, from 12 to 292: score 354.3, E = 7.6e-102
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      Y+ +++lG G++G+V l+r +++g+l AiK++k++  + ++++ lrE
    KIAA0936    12    YTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKrkfysweeCMNLRE 58   

                   ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg
                   +k Lkk +H N+VkL++v++++d+ly+++Ey+     +L++l+k+r++  
    KIAA0936    59 VKSLKKlNHANVVKLKEVIREnDHLYFIFEYMKE---NLYQLIKERNKL- 104  

                   lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKla
                       ++E+ +r +++Qil++L+++H++g+ HRDLKPeN+L+  ++ vK+a
    KIAA0936   105 ----FPEsAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGpeLVKIA 150  

                   DFGlArql......ttfvGTpeYmAPEvl....gYgkpavDiWSlGcily
                   DFGlAr+++++++ t +v T++Y+APEvl +++ Y+  ++D+W++Gci++
    KIAA0936   151 DFGLAREIrskppyTDYVSTRWYRAPEVLlrstNYSS-PIDVWAVGCIMA 199  

                   ElltGkpPFp...qldlifkkig...........................
                   E +t +p+Fp+ +++d+ifk++   ++++++++++++  ++  + +++  
    KIAA0936   200 EVYTLRPLFPgasEIDTIFKICQvlgtpkktdwpegyqlssamnfrwpqc 249  

                   ............SpeakdLikklLvkdPekRlta.eaLedeldikaHPff
                    +++ ++  ++ S+ea +L++ +L++dP+kR+ta++aL+        P+f
    KIAA0936   250 vpnnlktlipnaSSEAVQLLRDMLQWDPKKRPTAsQALR-------YPYF 292  

                   <-*
                      
    KIAA0936     -     -    

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