hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17172996/chunk_1/iprscan-20080502-17172996.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0936 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 386.9 2.7e-113 1 PF00069.15.fs Protein kinase domain 385.0 1.1e-112 1 PF07714.7.fs Protein tyrosine kinase 87.5 2.8e-25 1 PF07714.7.ls Protein tyrosine kinase 72.6 1.2e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 12 292 .. 1 287 [] 385.0 1.1e-112 PF07714.7.fs 1/1 12 204 .. 1 212 [. 87.5 2.8e-25 PF00069.15.ls 1/1 12 292 .. 1 287 [] 386.9 2.7e-113 PF07714.7.ls 1/1 12 292 .. 1 272 [] 72.6 1.2e-18 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 12 to 292: score 385.0, E = 1.1e-112 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y+++++lG G++G+V +++ + +g++ A+K++k++ ++++++++r KIAA0936 12 YTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLR- 57 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E++ lk+L+H N+v+l++v +++dhly+++Ey+ L+ +++ KIAA0936 58 --EVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKE-----NLYQLIK- 99 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv +r++ + +e +++i++Qil+gl+++H++g+ HRDLKPeN+L+ KIAA0936 100 -ERNKLF--PESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPEL 146 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD v KiaDFGlA+ ++s++++t++v T+wY+APEvll ++ y++++D KIAA0936 147 V----KIADFGLARE--IrSKPpYTDYVSTRWYRAPEVLLRSTNYSSPID 190 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds vW++G+i++e++t +p+F+g+ s++d +++i+++lg+p + d+pe + KIAA0936 191 VWAVGCIMAEVYTLRPLFPGA---SeIDTIFKICQVLGTPKKTDWPEGYQ 237 isrse.fr.........r.l.pnlseeakdLikkcLnkDPskRltaeeil s ++fr ++ +++ ++l pn+s+ea +L++++L++DP+kR+ta ++l KIAA0936 238 LSSAMnFRwpqcvpnnlKtLiPNASSEAVQLLRDMLQWDPKKRPTASQAL 287 qHPwf<-* P+f KIAA0936 288 RYPYF 292 PF07714.7.fs: domain 1 of 1, from 12 to 204: score 87.5, E = 2.8e-25 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei + +++LG G +G+V +G+ + + A+K+++++ +s ee KIAA0936 12 YTTIRQLGDGTYGSVLLGRSI----ESGELIAIKKMkRK-FYSWEE- 52 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd lrE++ +kkl +H N+V+L v+ + + ly ++Eym+ + KIAA0936 53 --CMNLREVKSLKKL-NHANVVKLKEVIRE-NDH----LYFIFEYMKE-N 93 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L+ +++ ++ ++ + + ++++Qi +G+++ + ++f HRDL N L KIAA0936 94 LYQLIKER--NKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLC 141 senlvVKIsDFGLaRdiynddyYvrkkgggklPv......kWm.APEslk + VKI+DFGLaR i r+k P ++ +++W++APE+l KIAA0936 142 MGPELVKIADFGLAREI-------RSKP----PYtdyvstRWYrAPEVLL 180 ygk.FtskSDVWSFGVlLWEiftl<-* + +++s DVW+ G+ + E++tl KIAA0936 181 RSTnYSSPIDVWAVGCIMAEVYTL 204 PF00069.15.ls: domain 1 of 1, from 12 to 292: score 386.9, E = 2.7e-113 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y+++++lG G++G+V +++ + +g++ A+K++k++ ++++++++r KIAA0936 12 YTTIRQLGDGTYGSVLLGRSIESGELIAIKKMKRKFYSWEECMNLR- 57 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E++ lk+L+H N+v+l++v +++dhly+++Ey+ L+ +++ KIAA0936 58 --EVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKE-----NLYQLIK- 99 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv +r++ + +e +++i++Qil+gl+++H++g+ HRDLKPeN+L+ KIAA0936 100 -ERNKLF--PESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLCMGPEL 146 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD v KiaDFGlA+ ++s++++t++v T+wY+APEvll ++ y++++D KIAA0936 147 V----KIADFGLARE--IrSKPpYTDYVSTRWYRAPEVLLRSTNYSSPID 190 vWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefdspewds vW++G+i++e++t +p+F+g+ s++d +++i+++lg+p + d+pe + KIAA0936 191 VWAVGCIMAEVYTLRPLFPGA---SeIDTIFKICQVLGTPKKTDWPEGYQ 237 isrse.fr.........r.l.pnlseeakdLikkcLnkDPskRltaeeil s ++fr ++ +++ ++l pn+s+ea +L++++L++DP+kR+ta ++l KIAA0936 238 LSSAMnFRwpqcvpnnlKtLiPNASSEAVQLLRDMLQWDPKKRPTASQAL 287 qHPwf<-* P+f KIAA0936 288 RYPYF 292 PF07714.7.ls: domain 1 of 1, from 12 to 292: score 72.6, E = 1.2e-18 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei + +++LG G +G+V +G+ + + A+K+++++ +s ee KIAA0936 12 YTTIRQLGDGTYGSVLLGRSI----ESGELIAIKKMkRK-FYSWEE- 52 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd lrE++ +kkl +H N+V+L v+ + + ly ++Eym+ + KIAA0936 53 --CMNLREVKSLKKL-NHANVVKLKEVIRE-NDH----LYFIFEYMKE-N 93 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L+ +++ ++ ++ + + ++++Qi +G+++ + ++f HRDL N L KIAA0936 94 LYQLIKER--NKLFPESAIRNIMYQILQGLAFIHKHGFFHRDLKPENLLC 141 senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm.APEslkygk.Ft + VKI+DFGLaR i ++ Y + + +W++APE+l + +++ KIAA0936 142 MGPELVKIADFGLAREIRSKPPY-TDY----VSTRWYrAPEVLLRSTnYS 186 skSDVWSFGVlLWEiftlGeqP.F.......................... s DVW+ G+ + E++t P F++ ++ ++ + + +++++++ ++ KIAA0936 187 SPIDVWAVGCIMAEVYT--LRPlFpgaseidtifkicqvlgtpkktdwpe 234 ...........YpgmsneevlellyedGyRLprPenCPdelYdlMlqCWa + + ++ + ++p + ++ ++ l+ +n++ e +l+++ + KIAA0936 235 gyqlssamnfrWPQCVPNNLKTLI----------PNASSEAVQLLRDMLQ 274 edPedRPtFsel..veeL<-* +dP++RPt s+ ++ + KIAA0936 275 WDPKKRPTASQAlrYPYF 292 //