hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17140976/chunk_1/iprscan-20080502-17140976.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0934 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00501.18.fs AMP-binding enzyme 201.0 2.6e-57 3 PF00501.18.ls AMP-binding enzyme 160.5 4e-45 1 PF06464.2.ls DMAP1-binding Domain 146.5 6.7e-41 1 PF06464.2.fs DMAP1-binding Domain 144.5 2.6e-40 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06464.2.fs 1/1 36 149 .. 1 116 [] 144.5 2.6e-40 PF06464.2.ls 1/1 36 149 .. 1 116 [] 146.5 6.7e-41 PF00501.18.fs 1/3 380 526 .. 1 98 [. 29.6 3.6e-08 PF00501.18.fs 2/3 733 832 .. 264 356 .. 12.9 0.0017 PF00501.18.fs 3/3 1032 1504 .. 1 377 [] 158.5 1.6e-44 PF00501.18.ls 1/1 1032 1504 .. 1 377 [] 160.5 4e-45 Alignments of top-scoring domains: PF06464.2.fs: domain 1 of 1, from 36 to 149: score 144.5, E = 2.6e-40 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr e +LP eVr RLaeL+l+LsegdiT+KGyeKk++kL +Lp++ r KIAA0934 36 EGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPR 82 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa + +l ++r+ + + +++ +++++ ++s ++e+++++v++e+V+a+La KIAA0934 83 VDQALPQERRAPVTPSSA--SRYHRRRSSGSRDERYRSDVHTEAVQAALA 130 kelerengkpmpskersgl<-* k++er++++pmpsk+rs KIAA0934 131 KHKERKMAVPMPSKRRSLV 149 PF06464.2.ls: domain 1 of 1, from 36 to 149: score 146.5, E = 6.7e-41 *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr e +LP eVr RLaeL+l+LsegdiT+KGyeKk++kL +Lp++ r KIAA0934 36 EGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPR 82 tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa + +l ++r+ + + +++ +++++ ++s ++e+++++v++e+V+a+La KIAA0934 83 VDQALPQERRAPVTPSSA--SRYHRRRSSGSRDERYRSDVHTEAVQAALA 130 kelerengkpmpskersgl<-* k++er++++pmpsk+rs KIAA0934 131 KHKERKMAVPMPSKRRSLV 149 PF00501.18.fs: domain 1 of 3, from 380 to 526: score 29.6, E = 3.6e-08 *->TYrELderanrlAaaLr.alG......vgpGdrVaillpns..pelv TY+ L++r+ ++A +++lG+++++ v+pGdrVa+ +pn +++ ++ KIAA0934 380 TYGKLWTRSMKVAYSILhKLGtkqepmVRPGDRVALVFPNNdpAAFM 426 vailAvlkaGaayvPldpsypa.....erlayiledsgakvlltddalla +a++++l a ++vP+ ++ ++ +++++ ++l +g++v lt+da + KIAA0934 427 AAFYGCLLAEVVPVPIEVPLTRkdagsQQIGFLLGSCGVTVALTSDACHK 476 .l...............................s.e.p.ppvdpddlAyi +l+++++++ + ++ ++ +++++ ++++ + p+ +d+Ayi KIAA0934 477 gLpksptgeipqfkgwpkllwfvteskhlskppRdWfPhIKDANNDTAYI 526 <-* KIAA0934 - - PF00501.18.fs: domain 2 of 3, from 733 to 832: score 12.9, E = 0.0017 *->iGrPlpgvevyvlDeeg..qpvppGevGELyirGwpgvarGYlnrPe +G ++pg+ + + ++g +q++ e+GEL++ Y++ + KIAA0934 733 VGLVMPGAIMCSVKPDGvpQLCRTDEIGELCVCA-VATGTSYYGLSG 778 lTaerFvadgwgp......GeRmYrTGDlgrwdpDGyleilGRkDdqvKi T+ +F + +++ + + + rTG lg + p G ++++G +D + + KIAA0934 779 MTKNTFEVFPMTSsgapisEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVV 828 rGer<-* +G r KIAA0934 829 SGRR 832 PF00501.18.fs: domain 3 of 3, from 1032 to 1504: score 158.5, E = 1.6e-44 *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk T +L+ ra+++A L ++ ++ Gd+Va+ p +++l++a++++l KIAA0934 1032 TCVQLHKRAEKIAVMLMeRGHLQDGDHVALVYPPGIDLIAAFYGCLY 1078 aGaayvPldpsypa......erlayiledsgakvlltddalla.l..... aG+++ ++ p +p++ ++ + i+e s++++l t+ l + ++ KIAA0934 1079 AGCVPITVRPPHPQniattlPTVKMIVEVSRSACLMTTQLICKlLrsrea 1128 .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG ++++++ + + ++++ +++ +++ p++pd lAy+ ++ TTG+ G KIAA0934 1129 aaavdvrtwplildtddlpkkRpAqIcKPCNPDTLAYLDFSVSTTGMLAG 1178 VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL V ++H++ ++++++ +++l p r + ++++ g+v++ ++++ KIAA0934 1179 VKMSHAATSAFCRSIKlQCeLyPS---REVAICLDPYCGLGFVLWCLCSV 1225 laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape.. ++G++ +l+p++++ +p+++l ++ +ykv +f+ ++++l+ k ++ KIAA0934 1226 YSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGsq 1275 ........edlssLrlvlsgGealpp.elarrlrerfgs........... +++ + ++ dls++r++++++e p+ +l + + ++f++ + +++ +++ KIAA0934 1276 teslkargLDLSRVRTCVVVAEERPRiALTQSFSKLFKDlglhpravsts 1325 ......ggvrlvngYGpTEttvvatanppg.p..............pgsi + + + + l + Gp ttv + + + +++ + +++++++ + KIAA0934 1326 fgcrvnLAICLQGTSGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 1375 GrPlpgvevyvlDeeg.qpvppGevGELyirGwpgvarGYlnrPelTaer G+ lpgv++ + ++e++ p+++ GE+++++ ++ a GY+ + e+ KIAA0934 1376 GKILPGVRIIIANPETkGPLGDSHLGEIWVHS-AHNASGYFTIYG--DES 1422 Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk +d + ++ + +++++ + rTG lg ++ + ++ +++++ l+++G + KIAA0934 1423 LQSDHFNSrlsfgdtQTIWARTGYLGFLRRTeltdangerhDALYVVGAL 1472 DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-* D+ +rG r p +iE+ + +ah V e+aV KIAA0934 1473 DEAMELRGMRYHPIDIETSVIrAHKSVTECAV 1504 PF00501.18.ls: domain 1 of 1, from 1032 to 1504: score 160.5, E = 4e-45 *->TYrELderanrlAaaLr.alGvgpGdrVaillpnspelvvailAvlk T +L+ ra+++A L ++ ++ Gd+Va+ p +++l++a++++l KIAA0934 1032 TCVQLHKRAEKIAVMLMeRGHLQDGDHVALVYPPGIDLIAAFYGCLY 1078 aGaayvPldpsypa......erlayiledsgakvlltddalla.l..... aG+++ ++ p +p++ ++ + i+e s++++l t+ l + ++ KIAA0934 1079 AGCVPITVRPPHPQniattlPTVKMIVEVSRSACLMTTQLICKlLrsrea 1128 .....................s.e.p.ppvdpddlAyiiYTSGTTGkPKG ++++++ + + ++++ +++ +++ p++pd lAy+ ++ TTG+ G KIAA0934 1129 aaavdvrtwplildtddlpkkRpAqIcKPCNPDTLAYLDFSVSTTGMLAG 1178 VmltHrnlvnlvaala.rf.l.pddaervllllppllhfdgsvweifgpL V ++H++ ++++++ +++l p r + ++++ g+v++ ++++ KIAA0934 1179 VKMSHAATSAFCRSIKlQCeLyPS---REVAICLDPYCGLGFVLWCLCSV 1225 laGatlvlvpkfdryrdpealldliekykvTvlflvPtllrlllkape.. ++G++ +l+p++++ +p+++l ++ +ykv +f+ ++++l+ k ++ KIAA0934 1226 YSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGsq 1275 ........edlssLrlvlsgGealpp.elarrlrerfgs........... +++ + ++ dls++r++++++e p+ +l + + ++f++ + +++ +++ KIAA0934 1276 teslkargLDLSRVRTCVVVAEERPRiALTQSFSKLFKDlglhpravsts 1325 ......ggvrlvngYGpTEttvvatanppg.p..............pgsi + + + + l + Gp ttv + + + +++ + +++++++ + KIAA0934 1326 fgcrvnLAICLQGTSGPDPTTVYVDMRALRhDrvrlvergsphslpLMES 1375 GrPlpgvevyvlDeeg.qpvppGevGELyirGwpgvarGYlnrPelTaer G+ lpgv++ + ++e++ p+++ GE+++++ ++ a GY+ + e+ KIAA0934 1376 GKILPGVRIIIANPETkGPLGDSHLGEIWVHS-AHNASGYFTIYG--DES 1422 Fvadgwgp.......GeRmYrTGDlgrwdpD..........GyleilGRk +d + ++ + +++++ + rTG lg ++ + ++ +++++ l+++G + KIAA0934 1423 LQSDHFNSrlsfgdtQTIWARTGYLGFLRRTeltdangerhDALYVVGAL 1472 DdqvKirGerIepgEiEavLl.ahPgVaeAaV<-* D+ +rG r p +iE+ + +ah V e+aV KIAA0934 1473 DEAMELRGMRYHPIDIETSVIrAHKSVTECAV 1504 //