hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17103878/chunk_1/iprscan-20080502-17103878.nocrc
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Query sequence: KIAA0932
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00042 819.4 7.5e-242 5
SM00235 189.6 3e-52 1
SM00179 97.6 1.4e-24 2
SM00181 66.7 3e-15 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00235 1/1 218 360 .. 1 204 [] 189.6 3e-52
SM00042 1/5 414 526 .. 1 144 [] 161.0 1.2e-43
SM00042 2/5 527 639 .. 1 144 [] 173.9 1.6e-47
SM00179 1/2 639 680 .. 1 34 [] 55.6 6.5e-12
SM00181 1/2 642 680 .. 1 32 [] 37.5 1.8e-06
SM00042 3/5 683 795 .. 1 144 [] 185.2 6e-51
SM00179 2/2 795 835 .. 1 34 [] 42.1 7.6e-08
SM00181 2/2 798 835 .. 1 32 [] 29.1 0.00059
SM00042 4/5 839 951 .. 1 144 [] 159.1 4.4e-43
SM00042 5/5 952 1068 .. 1 144 [] 140.2 2.2e-37
Alignments of top-scoring domains:
SM00235: domain 1 of 1, from 218 to 360: score 189.6, E = 3e-52
*->gskrWpk.tvpYridryfrpsnytsslspeevkltstvreaiarAfq
+++Wp++++pY+i +++++ +r+ +++A++
KIAA0932 218 TERIWPGgVIPYVI---------GGNFTGS-------QRAIFKQAMR 248
eWsdvTclrFvevtsegtadiyIsFgsgdhvrigdsGcfDgpgGetlsha
+W+++Tc++F e+t + +I+F ++ +Gc+ s++
KIAA0932 249 HWEKHTCVTFIERT---DEESFIVFSYRT------CGCC--------SYV 281
grpgryyfpgigGdqhfslqkSdenwClgfgpgtnlfgvaaHElGHALGl
gr g gG q +s+ + +C++fg ++aHElGH++G+
KIAA0932 282 GRRG-------GGPQAISI----GKNCDKFG-------IVAHELGHVVGF 313
yHeqsRsDGGdkRDnymyinyqnidpgsasernFdlssykidqddslgga
+He++R+D RD++++i +ni+pg +e+nF ++ +++slg
KIAA0932 314 WHEHTRPD----RDQHVTIIRENIQPG--QEYNFLKMEAG--EVSSLG-- 353
dipydYGs<-*
yd+ s
KIAA0932 354 -ETYDFDS 360
SM00042: domain 1 of 5, from 414 to 526: score 161.0, E = 1.2e-43
*->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
CG tl +++ G ++ P++Pn+ Yp+ ++CvW+Is++pG
KIAA0932 414 CGETLQDTT------GNFSAPGFPNG-----YPSYSHCVWRISVTPG 449
yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
+i L+Ft+ +dl s+ C+yDyve++DG++ ++pllG
KIAA0932 450 EKIVLNFTS---MDLFKSRL---------CWYDYVEVRDGYW-RKAPLLG 486
ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav
rfCG++ +++++s+ ++++v+F+s s++ ++GF a Y+a+
KIAA0932 487 ----RFCGDKipEpLVST-DSRLWVEFRSSSNIL-----GKGFFAAYEAT 526
<-*
KIAA0932 - -
SM00042: domain 2 of 5, from 527 to 639: score 173.9, E = 1.6e-47
*->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
CGg+++ + G i+SPnYP++ Y +++eCvW+I + +G
KIAA0932 527 CGGDMNKDA------GQIQSPNYPDD-----YRPSKECVWRIMVSEG 562
yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
+++ L+F+ F++E +d+ C+yDy+e++DGp+ + s l+G
KIAA0932 563 FHVGLTFQA---FEIERHDS---------CAYDYLEVRDGPT-EESALIG 599
ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav
fCG+e+++++ sS sN+++++FvsD+s++ k GF a+++ +
KIAA0932 600 ----HFCGYEkpEdVKSS-SNRLWMKFVSDGSIN-----KAGFAANFFKE 639
<-*
KIAA0932 - -
SM00179: domain 1 of 2, from 639 to 680: score 55.6, E = 6.5e-12
*->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe
+DEC+ ++++ C + +C+N+ GSY+C C+pGy+ +++ Ce
KIAA0932 639 EVDECswpdhgGCEH-----RCVNtLGSYKCaCDPGYElaadkKMCE 680
<-*
KIAA0932 - -
SM00181: domain 1 of 2, from 642 to 680: score 37.5, E = 1.8e-06
*->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe
eC+ +++++C++ +C+++ +sy+C C pGy++ +++ Ce
KIAA0932 642 ECSwpdhgGCEH-------RCVntlgSYKCaCD-PGYELaadkkMCE 680
<-*
KIAA0932 - -
SM00042: domain 3 of 5, from 683 to 795: score 185.2, E = 6e-51
*->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
CGg +t + GtitSP++P+ Yp n++CvW+++ap
KIAA0932 683 CGGFITKLN------GTITSPGWPKE-----YPTNKNCVWQVVAPAQ 718
yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
yri+L+F+ F+lE++d C yD+ve++ G s +++l+G
KIAA0932 719 YRISLQFEV---FELEGNDV---------CKYDFVEVRSGLS-PDAKLHG 755
ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
rfCGse+p++i+S+sN+m+v+F+sD++v+ krGF+a+++++
KIAA0932 756 ----RFCGSEtPeVITSQSNNMRVEFKSDNTVS-----KRGFRAHFFSD 795
-*
KIAA0932 - -
SM00179: domain 2 of 2, from 795 to 835: score 42.1, E = 7.6e-08
*->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe<
D DEC ++++ Cq+ C+N+ GSY C+C+ Gy + +++ C+
KIAA0932 795 DKDECakdngGCQH-----ECVNtFGSYLCrCRNGYWlhengHDCK 835
-*
KIAA0932 - -
SM00181: domain 2 of 2, from 798 to 835: score 29.1, E = 0.00059
*->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe<
eCa+++++C++ +C+++ +sy C+C+ +Gy ++++++ C+
KIAA0932 798 ECAkdngGCQH-------ECVntfgSYLCrCR-NGYWLhenghDCK 835
-*
KIAA0932 - -
SM00042: domain 4 of 5, from 839 to 951: score 159.1, E = 4.4e-43
*->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
C + + + Gt+ SPn+P++ Yp+ eC+W+Is + G
KIAA0932 839 CAHKISSVE------GTLASPNWPDK-----YPSRRECTWNISSTAG 874
yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
+r++L+F + F++E +++ C+yD++e yDGp+ +p lG
KIAA0932 875 HRVKLTFNE---FEIEQHQE---------CAYDHLEMYDGPD-SLAPILG 911
ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav
rfCGs+++ +++ S ++sm+++F sD svq ++GF+a +s++
KIAA0932 912 ----RFCGSKkpDpTVAS-GSSMFLRFYSDASVQ-----RKGFQAVHSTE 951
<-*
KIAA0932 - -
SM00042: domain 5 of 5, from 952 to 1068: score 140.2, E = 2.2e-37
*->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
CGg+l+a+ + + +++ + ++ +Yp+ + C W+I+a++G
KIAA0932 952 CGGRLKAEVQ---TKELYSHAQFGDN----NYPSEARCDWVIVAEDG 991
yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
y +eL+F F++E + + C+yDy e yDG++ s+p+lG
KIAA0932 992 YGVELTFRT---FEVEEEAD---------CGYDYMEAYDGYD-SSAPRLG 1028
ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
rfCGs++ + i+S+++s++++F++D +++ k+GF+arY+++
KIAA0932 1029 ----RFCGSGpLeEIYSAGDSLMIRFRTDDTIN-----KKGFHARYTST 1068
-*
KIAA0932 - -
//