hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17033515/chunk_1/iprscan-20080502-17033515.nocrc
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Query sequence: KIAA0928
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00535                                                 313.7    1.3e-89   2
SM00487                                                  94.1    1.6e-23   1
SM00490                                                  49.2    5.3e-10   1
SM00358                                                  44.8    1.2e-08   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      40   249 ..     1   219 []    94.1  1.6e-23
SM00490      1/1     459   556 ..     1    86 []    49.2  5.3e-10
SM00535      1/2    1295  1596 ..     1   140 []   135.0  7.8e-36
SM00535      2/2    1681  1847 ..     1   140 []   178.6  5.9e-49
SM00358      1/1    1850  1913 ..     1    68 []    44.8  1.2e-08

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 40 to 249: score 94.1, E = 1.6e-23
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      ++ ++r+yQ e ++++l+ +++i++  TGsGKT++++l   el ++ 
    KIAA0928    40    NIyTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQI 85   

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   + +    ++g+r+++lv     a+Q+a+++++   +++        +vg 
    KIAA0928    86 RGDF--SRNGKRTVFLVN---SANQVAQQVSAVRTHSD-------LKVGE 123  

                   ygG.skt.ke.keqlrklksgktdilvtTpgrLldll.ngkglsl.nldl
                   y++   + +++ke++++   ++ ++l++T  ++l+ l+ng+ lsl++++l
    KIAA0928   124 YSNlEVNaSWtKERWNQEFTKH-QVLIMTCYVALNVLkNGY-LSLsDINL 171  

                   vilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp....e
                   +++DE+H  +          ++ +++l++ +p+++++l+l+A + +++ +
    KIAA0928   172 LVFDECHLAILD------HPYREIMkLCENCPSCPRILGLTASILngkcD 215  

                   ienllklflnlpelfpnpvfisvgf.....tlepieqf<-*
                    e+l +++ +l     +++  + ++ ++  +l++++     
    KIAA0928   216 PEELEEKIQKLE----KILKSNAETatdlvVLDRYTSQ    249  

SM00490: domain 1 of 1, from 459 to 556: score 49.2, E = 5.3e-10
                   *->delaelLkellkdpgikvarlHG..................glsqee
                      + ++e  k+       + a++ ++  ++++ +++++++++ +   ++
    KIAA0928   459    RLIKEAGKQD-----PELAYISSnfitghgigknqprnkqmEAEFRK 500  

                   ReeilekFrkgkikvLvaTdvaerGlDipgvdlVInydlpwspasyiQRi
                   +ee+l+kFr+ + + L+aT++ e+G+Dip ++lV+ +dlp  + sy+Q  
    KIAA0928   501 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK 550  

                   GRaGRaG<-*
                   GR +Ra    
    KIAA0928   551 GR-ARAP    556  

SM00535: domain 1 of 2, from 1295 to 1596: score 135.0, E = 7.8e-36
                   *->eLLlqAlThaSyanehegsehneRLEFLGDaVLelviteyLykkfPd
                       L+lqAlT ++++++    ++ eRLE LGD++L+++it yL++++Pd
    KIAA0928  1295    GLILQALTLSNASDG----FNLERLEMLGDSFLKHAITTYLFCTYPD 1337 

                   lshEGdLsklRsalVsnetLarlakklglg....................
                   ++ EG Ls +Rs+ Vsn++L+rl+kk gl+++   +  +++ +  +++  
    KIAA0928  1338 AH-EGRLSYMRSKKVSNCNLYRLGKKKGLPsrmvvsifdppvnwlppgyv 1386 

                   ..................................................
                    +++++++++ ++++ +++    +++ +++ +++++++++   + ++++ 
    KIAA0928  1387 vnqdksntdkwekdemtkdcmlangkldedyeeedeeeeslmwrapkeea 1436 

                   ..................................................
                   + +++  + ++++ +  ++   +++   ++ + ++ +++++  + + +++
    KIAA0928  1437 dyeddfleydqehirfidnmlmgsgafvkkislspfsttdsayewkmpkk 1486 

                   ..................................................
                   ++ ++ + +++ ++ + ++ +     ++++  ++++   +  ++++++ +
    KIAA0928  1487 sslgsmpfssdfedfdysswdamcyldpskaveeddfvvgfwnpseencg 1536 

                   .......eflrlgrgeeksggrepgdidkpkilADvfEAliGAiYLDsGl
                    ++++++  + l+++ +++++           +AD++EAl+G+++  +G 
    KIAA0928  1537 vdtgkqsISYDLHTEQCIADKS----------IADCVEALLGCYLTSCGE 1576 

                   eaaeefirkllgprleeltl<-*
                    aa+ f++ l ++ l+ +++   
    KIAA0928  1577 RAAQLFLCSLGLKVLPVIKR    1596 

SM00535: domain 2 of 2, from 1681 to 1847: score 178.6, E = 5.9e-49
                   *->eLLlqAlThaSyanehegsehneRLEFLGDaVLelviteyLykkfPd
                      ++LlqA+ThaSy +++ ++ +++RLEFLGDa+L+++it++Ly+++++
    KIAA0928  1681    AYLLQAFTHASYHYNT-ITDCYQRLEFLGDAILDYLITKHLYEDPRQ 1726 

                   lshEGdLsklRsalVsnetLarlakklglg....................
                   +s +G+L++lRsalV+n  +a+la+k++ ++  +  +++  +  ++  + 
    KIAA0928  1727 HS-PGVLTDLRSALVNNTIFASLAVKYDYHkyfkavspelfhviddfvqf 1775 

                   ............eflrlgrgeeksggrepgdidkpkilADvfEAliGAiY
                   + ++++ ++ ++e  r   +eek++     di+ pk+++D+fE+l GAiY
    KIAA0928  1776 qleknemqgmdsELRRSEEDEEKEE-----DIEVPKAMGDIFESLAGAIY 1820 

                   LDsG..leaaeefirkllgprleeltl<-*
                   +DsG +le+++++ +++++p +e+++    
    KIAA0928  1821 MDSGmsLETVWQVYYPMMRPLIEKFSA    1847 

SM00358: domain 1 of 1, from 1850 to 1913: score 44.8, E = 1.2e-08
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvggkitgeG
                      p s + El++++   + ++   +    d + r tv+v+ +g  +++G
    KIAA0928  1850    PRSPVRELLEMEPE-TAKFSPAE-RTYDGKVRVTVEVVGKG--KFKG 1892 

                   eGsSKKeAkqaAAeaALrkLk<-*
                   +G+S ++Ak+aAA+ ALr+Lk   
    KIAA0928  1893 VGRSYRIAKSAAARRALRSLK    1913 

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