hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17033515/chunk_1/iprscan-20080502-17033515.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0928 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00636.16.fs RNase3 domain 236.3 8.2e-70 2 PF00636.16.ls RNase3 domain 240.3 3.8e-69 2 PF03368.5.ls Domain of unknown function 219.6 6.7e-63 1 PF03368.5.fs Domain of unknown function 217.6 2.6e-62 1 PF02170.12.fs PAZ domain 147.3 8.8e-43 1 PF02170.12.ls PAZ domain 149.3 9.6e-42 1 PF00271.21.fs Helicase conserved C-terminal domain 60.6 4.3e-17 1 PF00271.21.ls Helicase conserved C-terminal domain 61.3 2.8e-15 1 PF00270.19.fs DEAD/DEAH box helicase 37.4 3.9e-10 1 PF00270.19.ls DEAD/DEAH box helicase 32.6 9.2e-09 1 PF00035.15.fs Double-stranded RNA binding motif 28.9 2e-07 1 PF04851.6.ls Type III restriction enzyme, res subun 12.3 4e-06 1 PF00035.15.ls Double-stranded RNA binding motif 30.8 4.4e-06 1 PF04851.6.fs Type III restriction enzyme, res subun 21.8 9.2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04851.6.fs 1/1 41 108 .. 1 88 [. 21.8 9.2e-06 PF04851.6.ls 1/1 41 211 .. 1 238 [] 12.3 4e-06 PF00270.19.fs 1/1 45 207 .. 1 204 [. 37.4 3.9e-10 PF00270.19.ls 1/1 45 219 .. 1 213 [] 32.6 9.2e-09 PF00271.21.ls 1/1 470 556 .. 1 76 [] 61.3 2.8e-15 PF00271.21.fs 1/1 499 556 .. 18 76 .] 60.6 4.3e-17 PF03368.5.fs 1/1 630 722 .. 1 99 [] 217.6 2.6e-62 PF03368.5.ls 1/1 630 722 .. 1 99 [] 219.6 6.7e-63 PF02170.12.ls 1/1 891 1065 .. 1 160 [] 149.3 9.6e-42 PF02170.12.fs 1/1 891 1065 .. 1 160 [] 147.3 8.8e-43 PF00636.16.ls 1/2 1313 1575 .. 1 97 [] 100.1 6e-27 PF00636.16.fs 1/2 1313 1575 .. 1 97 [] 98.1 1.1e-28 PF00636.16.ls 2/2 1702 1824 .. 1 97 [] 140.2 5.3e-39 PF00636.16.fs 2/2 1702 1824 .. 1 97 [] 138.1 1.3e-40 PF00035.15.ls 1/1 1853 1912 .. 1 67 [] 30.8 4.4e-06 PF00035.15.fs 1/1 1853 1912 .. 1 67 [] 28.9 2e-07 Alignments of top-scoring domains: PF04851.6.fs: domain 1 of 1, from 41 to 108: score 21.8, E = 9.2e-06 *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs ++++R+yQ+e +++ l ++ ++ + TGs KIAA0928 41 IYTPRKYQVELLEAAL-------------------DHNTIVCLNTGS 68 GKTltaakiliarLlkkqq.klkkg.ridkvLFlVprkdLleQ<-* GKT++a l ++L ++ + +++ +++FlV++ + + Q KIAA0928 69 GKTFIAVL-LTKELSYQIRgDFSRNgK--RTVFLVNSANQVAQ 108 PF04851.6.ls: domain 1 of 1, from 41 to 211: score 12.3, E = 4e-06 *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs ++++R+yQ+e +++ l ++ ++ + TGs KIAA0928 41 IYTPRKYQVELLEAAL-------------------DHNTIVCLNTGS 68 GKTltaakiliarLlkkqq.klkkg.ridkvLFlVprkdLleQaleeFtk GKT++a l ++L ++ + +++ +++FlV++ + + Q KIAA0928 69 GKTFIAVL-LTKELSYQIRgDFSRNgK--RTVFLVNSANQVAQQV----- 110 feskkkkef.knpgvdkklkvltdnqkdsadggkskkndikiifttiQkL s+ + +++++g+ ++ + +++ ++ KIAA0928 111 --SAVRTHSdLKVGEYSN------LEVNASWTKER--------------- 137 skalkeekendeeekskskeivvglrlapesleflldefd.......... +++ef +++ + + KIAA0928 138 -----------------------------WNQEFTKHQVLimtcyvalnv 158 ............viIiDEaHrssaktkskkrdedaeklavyrkileKWl. +++ + ++ +++++DE+H ++ ++ yr+i++ l KIAA0928 159 lkngylslsdinLLVFDECHLAILDHP-------------YREIMK--Lc 193 ..kyfkpaflLGlTATPer<-* +++ + + +LGlTA KIAA0928 194 enC-PSCPRILGLTASILN 211 PF00270.19.fs: domain 1 of 1, from 45 to 207: score 37.4, E = 3.9e-10 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq +++Q e ++a+l+ ++ +v+ TGSGKT +++l + + + KIAA0928 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQiR---- 86 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv +++++g+++++l+ a+Q+++++ + + ++lkv KIAA0928 87 ----GDFSRNGKRTVFLV---NSANQVAQQVSAVRTH--------SDLKV 121 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx allyGGdsikeqleklDYrlkkglk.gkpdIlvgTPgrLldlllkgrkre + y+ ++ k r ++++ +++ ++l++T l l k+ KIAA0928 122 GE-YSNLEVNASWTKE--R-WNQEFtKH-QVLIMTCYVALNVL----KN- 161 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx gasldlknlkllVlDEAhrlldmkGfgedleeilrrlpr.pklrrlsqdl g l+l+++ llV+DE+h+ + +ei++ + p+ KIAA0928 162 GY-LSLSDINLLVFDECHLAI----LDHPYREIMKLCENcPS-------- 198 RF xxxx xxxxxx pnrq.tllfSA<-* ++++l+++A KIAA0928 199 --CPrILGLTA 207 PF00270.19.ls: domain 1 of 1, from 45 to 219: score 32.6, E = 9.2e-09 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq +++Q e ++a+l+ ++ +v+ TGSGKT +++l + + + KIAA0928 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQiR---- 86 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv +++++g+++++l+ a+Q+++++ + + ++lkv KIAA0928 87 ----GDFSRNGKRTVFLV---NSANQVAQQVSAVRTH--------SDLKV 121 RF xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx allyGGdsikeqleklDYrlkkglk.gkpdIlvgTPgrLldlllkgrkre + y+ ++ k r ++++ +++ ++l++T l l k+ KIAA0928 122 GE-YSNLEVNASWTKE--R-WNQEFtKH-QVLIMTCYVALNVL----KN- 161 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx gasldlknlkllVlDEAhrlldmkGfgedleeilrrlpr.pklrrlsqdl g l+l+++ llV+DE+h+ + +ei++ + p+ KIAA0928 162 GY-LSLSDINLLVFDECHLAI----LDHPYREIMKLCENcPS-------- 198 RF xxxx xxxxxxxx xxxxxxx pnrq.tllfSATl....prnvedl<-* ++++l+++A + +++ ++e+l KIAA0928 199 --CPrILGLTASIlngkC-DPEEL 219 PF00271.21.ls: domain 1 of 1, from 470 to 556: score 61.3, E = 2.8e-15 *->ll.epgikvarlhG...........glsqeeReeilekFrngkskvL +l + +++ hG +++++++++ + + +++ee+l+kFr+ ++++L KIAA0928 470 ELaYISSNFITGHGigknqprnkqmEAEFRKQEEVLRKFRAHETNLL 516 vaTdvagrGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* +aT++ ++G+Dip +nlV+ +dlp + sy+Q GR +Ra KIAA0928 517 IATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAP 556 PF00271.21.fs: domain 1 of 1, from 499 to 556: score 60.6, E = 4.3e-17 *->eeReeilekFrngkskvLvaTdvagrGiDipdvnlVInydlpwnpes +++ee+l+kFr+ ++++L+aT++ ++G+Dip +nlV+ +dlp + s KIAA0928 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRS 545 yiQRiGRaGRaG<-* y+Q GR +Ra KIAA0928 546 YVQSKGR-ARAP 556 PF03368.5.fs: domain 1 of 1, from 630 to 722: score 217.6, E = 2.6e-62 *->AvglvnkYCsrLPsDvfTrLvPeftiekqelpggGvTeYcfeLeLPi A+g++n+YC+rLPsD+fT+L+P++ +++elp+g +++++L+LPi KIAA0928 630 AIGHINRYCARLPSDPFTHLAPKC--RTRELPDG---TFYSTLYLPI 671 NsPlkaaiVLGpPmssirlAqqavALiaCkkLHrmGeLDDhLlPlgkegv NsPl+a+iV GpPms++rlA+++vALi+C+kLH++GeLDDhL+P+gke+v KIAA0928 672 NSPLRASIV-GPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720 ka<-* k+ KIAA0928 721 KY 722 PF03368.5.ls: domain 1 of 1, from 630 to 722: score 219.6, E = 6.7e-63 *->AvglvnkYCsrLPsDvfTrLvPeftiekqelpggGvTeYcfeLeLPi A+g++n+YC+rLPsD+fT+L+P++ +++elp+g +++++L+LPi KIAA0928 630 AIGHINRYCARLPSDPFTHLAPKC--RTRELPDG---TFYSTLYLPI 671 NsPlkaaiVLGpPmssirlAqqavALiaCkkLHrmGeLDDhLlPlgkegv NsPl+a+iV GpPms++rlA+++vALi+C+kLH++GeLDDhL+P+gke+v KIAA0928 672 NSPLRASIV-GPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETV 720 ka<-* k+ KIAA0928 721 KY 722 PF02170.12.ls: domain 1 of 1, from 891 to 1065: score 149.3, E = 9.6e-42 *->qpvldfltdiltqrtrlgsdfqeeerm....fikkaLkGliVlttyn + ++f++di++ + r+g+ ++++ ++++ f +++++++++++y+ KIAA0928 891 DIDFKFMEDIEKSEARIGIPSTKYTKEtpfvFKLEDYQDAVIIPRYR 937 nnkqpkerrtYrIdgisfdptpnstFplkrddeegegdgkeisvaeYyke n +qp +++++++ +d tp+s+Fp ++ ++aeYyk KIAA0928 938 NFDQP---HRFYVADVYTDLTPLSKFPSP----------EYETFAEYYKT 974 kYnielkypnlPllvvgkkkrrlnlgtpre.................... kYn++l+ n+Pll+v++++ rlnl+tpr+ +++++ + ++ ++++ + KIAA0928 975 KYNLDLTNLNQPLLDVDHTSSRLNLLTPRHlnqkgkalplssaekrkakw 1024 ....qpnyLPpELCfitggqrymrkdfnlqksiaiktrasp<-* ++ +++++L+pELC i+++++++++++++++si+++ +++ KIAA0928 1025 eslqNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL 1065 PF02170.12.fs: domain 1 of 1, from 891 to 1065: score 147.3, E = 8.8e-43 *->qpvldfltdiltqrtrlgsdfqeeerm....fikkaLkGliVlttyn + ++f++di++ + r+g+ ++++ ++++ f +++++++++++y+ KIAA0928 891 DIDFKFMEDIEKSEARIGIPSTKYTKEtpfvFKLEDYQDAVIIPRYR 937 nnkqpkerrtYrIdgisfdptpnstFplkrddeegegdgkeisvaeYyke n +qp +++++++ +d tp+s+Fp ++ ++aeYyk KIAA0928 938 NFDQP---HRFYVADVYTDLTPLSKFPSP----------EYETFAEYYKT 974 kYnielkypnlPllvvgkkkrrlnlgtpre.................... kYn++l+ n+Pll+v++++ rlnl+tpr+ +++++ + ++ ++++ + KIAA0928 975 KYNLDLTNLNQPLLDVDHTSSRLNLLTPRHlnqkgkalplssaekrkakw 1024 ....qpnyLPpELCfitggqrymrkdfnlqksiaiktrasp<-* ++ +++++L+pELC i+++++++++++++++si+++ +++ KIAA0928 1025 eslqNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLL 1065 PF00636.16.ls: domain 1 of 2, from 1313 to 1575: score 100.1, E = 6e-27 *->ERLEFLGDaVLnlvvteyLykkfPdldEGeLtklRsalVsnetLakl ERLE LGD++L+ ++t yL++++Pd++EG L+ +Rs+ Vsn++L++l KIAA0928 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1359 ArklgLgkylllgkgelrewi.pfv......................... ++k+gL++ + + +++ + p+ +++++++++ ++++ +++ KIAA0928 1360 GKKKGLPSRMVVSIFDPPVNWlPPGyvvnqdksntdkwekdemtkdcmla 1409 .................................................. +++ +++ +++++++++ + ++++ + +++ + ++++ + ++ + KIAA0928 1410 ngkldedyeeedeeeeslmwrapkeeadyeddfleydqehirfidnmlmg 1459 .................................................. ++ ++ + ++ +++++ + + +++++ ++ + +++ ++ + ++ + KIAA0928 1460 sgafvkkislspfsttdsayewkmpkksslgsmpfssdfedfdysswdam 1509 .......................................ksggr.kpkiL ++++ ++++ + ++++++ + ++++++ + + + +k + KIAA0928 1510 cyldpskaveeddfvvgfwnpseencgvdtgkqsisydlHTEQCiADKSI 1559 aDvfEAliGAiYLDgG<-* aD++EAl+G ++ ++G KIAA0928 1560 ADCVEALLGCYLTSCG 1575 PF00636.16.fs: domain 1 of 2, from 1313 to 1575: score 98.1, E = 1.1e-28 *->ERLEFLGDaVLnlvvteyLykkfPdldEGeLtklRsalVsnetLakl ERLE LGD++L+ ++t yL++++Pd++EG L+ +Rs+ Vsn++L++l KIAA0928 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1359 ArklgLgkylllgkgelrewi.pfv......................... ++k+gL++ + + +++ + p+ +++++++++ ++++ +++ KIAA0928 1360 GKKKGLPSRMVVSIFDPPVNWlPPGyvvnqdksntdkwekdemtkdcmla 1409 .................................................. +++ +++ +++++++++ + ++++ + +++ + ++++ + ++ + KIAA0928 1410 ngkldedyeeedeeeeslmwrapkeeadyeddfleydqehirfidnmlmg 1459 .................................................. ++ ++ + ++ +++++ + + +++++ ++ + +++ ++ + ++ + KIAA0928 1460 sgafvkkislspfsttdsayewkmpkksslgsmpfssdfedfdysswdam 1509 .......................................ksggr.kpkiL ++++ ++++ + ++++++ + ++++++ + + + +k + KIAA0928 1510 cyldpskaveeddfvvgfwnpseencgvdtgkqsisydlHTEQCiADKSI 1559 aDvfEAliGAiYLDgG<-* aD++EAl+G ++ ++G KIAA0928 1560 ADCVEALLGCYLTSCG 1575 PF00636.16.ls: domain 2 of 2, from 1702 to 1824: score 140.2, E = 5.3e-39 *->ERLEFLGDaVLnlvvteyLykkfPdldEGeLtklRsalVsnetLakl +RLEFLGDa+L++++t++Ly+ ++++G Lt+lRsalV+n+++a+l KIAA0928 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASL 1748 ArklgLgkylllgkgelrewi.pfv........................k A+k+ +ky++ ++el + i++fv+ + ++++ ++ +++ ++++++++k KIAA0928 1749 AVKYDYHKYFKAVSPELFHVIdDFVqfqleknemqgmdselrrseedeeK 1798 sggr.kpkiLaDvfEAliGAiYLDgG<-* ++pk+++D+fE+l+GAiY+D+G KIAA0928 1799 EEDIeVPKAMGDIFESLAGAIYMDSG 1824 PF00636.16.fs: domain 2 of 2, from 1702 to 1824: score 138.1, E = 1.3e-40 *->ERLEFLGDaVLnlvvteyLykkfPdldEGeLtklRsalVsnetLakl +RLEFLGDa+L++++t++Ly+ ++++G Lt+lRsalV+n+++a+l KIAA0928 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASL 1748 ArklgLgkylllgkgelrewi.pfv........................k A+k+ +ky++ ++el + i++fv+ + ++++ ++ +++ ++++++++k KIAA0928 1749 AVKYDYHKYFKAVSPELFHVIdDFVqfqleknemqgmdselrrseedeeK 1798 sggr.kpkiLaDvfEAliGAiYLDgG<-* ++pk+++D+fE+l+GAiY+D+G KIAA0928 1799 EEDIeVPKAMGDIFESLAGAIYMDSG 1824 PF00035.15.ls: domain 1 of 1, from 1853 to 1912: score 30.8, E = 4.4e-06 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p+++L E ++p+ +++ +++ + + +vtv+v gk KIAA0928 1853 PVRELLE-------MEPETAKFSPaERTYD-GKVRVTVEVVGKGKFK 1891 GkgssKKeAkqlAAekALrkL<-* G+g+s + Ak +AA+ ALr L KIAA0928 1892 GVGRSYRIAKSAAARRALRSL 1912 PF00035.15.fs: domain 1 of 1, from 1853 to 1912: score 28.9, E = 2e-07 *->pkslLqEllcqkkgkkppyeyiee.gpphnpptFtvtvtvngkeygt p+++L E ++p+ +++ +++ + + +vtv+v gk KIAA0928 1853 PVRELLE-------MEPETAKFSPaERTYD-GKVRVTVEVVGKGKFK 1891 GkgssKKeAkqlAAekALrkL<-* G+g+s + Ak +AA+ ALr L KIAA0928 1892 GVGRSYRIAKSAAARRALRSL 1912 //