hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17015869/chunk_1/iprscan-20080502-17015869.nocrc
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Query sequence: KIAA0927
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00032                                                 226.8    1.9e-63   4
SM00042                                                 194.5      1e-53   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00042    1/3     333   441 ..     1   144 []    36.5  3.5e-06
SM00032    1/4     445   500 ..     1    79 []    47.5  1.8e-09
SM00042    2/3     504   614 ..     1   144 []    74.6  1.2e-17
SM00032    2/4     619   676 ..     1    79 []    51.8  9.2e-11
SM00042    3/3     680   791 ..     1   144 []    83.3  2.9e-20
SM00032    3/4     797   852 ..     1    79 []    65.5  6.9e-15
SM00032    4/4     861   918 ..     1    79 []    62.1  7.2e-14

Alignments of top-scoring domains:
SM00042: domain 1 of 3, from 333 to 441: score 36.5, E = 3.5e-06
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      C+ ++  ++      G+i S  YP  p     +n leC++++++  G
    KIAA0927   333    CSVSFSNPE------GYIDSSDYPLLP----LNNFLECTYNVTVYTG 369  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiy..DGpsktsspl
                   y +eL+  +    +l +               + + i++ DGp+    ++
    KIAA0927   370 YGVELQVKS---VNLSDG--------------ELLSIRgvDGPT---LTV 399  

                   lGntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa
                   l+          + ++i+S +N++ v F++   +         F+++Y+a
    KIAA0927   400 LA----NQTLLVeGqVIRSPTNTISVYFRTFQDDG-----LGTFQLHYQA 440  

                   v<-*
                   +   
    KIAA0927   441 F    441  

SM00032: domain 1 of 4, from 445 to 500: score 47.5, E = 1.8e-09
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C  P     ++ G+vt+ +           + G +++++C+ GY+l+
    KIAA0927   445    CNfPR---RPDSGDVTVMD----------LHSGGVAHFHCHLGYELQ 478  

                   GgsqpekSrestsstitCtsn....WspppsgplPtC<-*
                   G            + +tC++ ++++Ws+++    P+C   
    KIAA0927   479 G-----------AKMLTCINAskphWSSQE----PIC    500  

SM00042: domain 2 of 3, from 504 to 614: score 74.6, E = 1.2e-17
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg +  ++      G++ SP+YP++      + ++ C+WtI+ap+G
    KIAA0927   504    CGGAVHNATI-----GRVLSPSYPEN-----TNGSQFCIWTIEAPEG 540  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   ++++L+F+      l  +d             D  +++ G + ++s ll 
    KIAA0927   541 QKLHLHFER-----LLLHDK------------DRMTVHSGQT-NKSALLY 572  

                   ntearfCGse....p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYs
                           +e+ + ++++s  +N+++++F sD         ++ F++r++
    KIAA0927   573 ----DSLQTEsvpfEgLLSE-GNTIRIEFTSDQARA-----ASTFNIRFE 612  

                   av<-*
                   a+   
    KIAA0927   613 AF    614  

SM00032: domain 2 of 4, from 619 to 676: score 51.8, E = 9.2e-11
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C +P     i+nG +t+s+        +ty++G+ v+++C+pG++l 
    KIAA0927   619    CYePY----IQNGNFTTSD--------PTYNIGTIVEFTCDPGHSLE 653  

                   GgsqpekSrestsstitCtsn.....WspppsgplPtC<-*
                    g          +++i+C+ n +++ W++++    P C   
    KIAA0927   654 QG----------PAIIECI-NvrdpyWNDTE----PLC    676  

SM00042: domain 3 of 3, from 680 to 791: score 83.3, E = 2.9e-20
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg+l a        G++ SPn+P++     Y  + +C+W I++ + 
    KIAA0927   680    CGGELSAVA------GVVLSPNWPEP-----YVEGEDCIWKIHVGEE 715  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   +ri L+++    ++l +               D ++iyDG++ +    lG
    KIAA0927   716 KRIFLDIQF---LNLSN--------------SDILTIYDGDE-VMPHILG 747  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       ++ G+++p+ ++Ss+  +t++F+sD+ +   g +++GF ++Y  v 
    KIAA0927   748 ----QYLGNSgPqKLYSSTPDLTIQFHSDPAGLIFG-KGQGFIMNYIEV  791  

                   -*
                     
    KIAA0927     -    -    

SM00032: domain 3 of 4, from 797 to 852: score 65.5, E = 6.9e-15
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C+++p   +i+nG  t+s+        ++   G ++ty+C+pGY +v
    KIAA0927   797    CSdLP---EIQNGWKTTSH--------TELVRGARITYQCDPGYDIV 832  

                   GgsqpekSrestsstitCtsn..WspppsgplPtC<-*
                   G           s t+tC+ + +Ws+ p    P+C   
    KIAA0927   833 G-----------SDTLTCQWDlsWSSDP----PFC    852  

SM00032: domain 4 of 4, from 861 to 918: score 62.1, E = 7.2e-14
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C++P+    +enG+ + ++        + y  G+++t+ C +G++l+
    KIAA0927   861    CDnPG---LPENGYQILYK--------RLYLPGESLTFMCYEGFELM 896  

                   GgsqpekSrestsstitCtsn....WspppsgplPtC<-*
                   G           + ti+C+ +++++W++p     P C   
    KIAA0927   897 G-----------EVTIRCILGqpshWNGPL----PVC    918  

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