hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17015869/chunk_1/iprscan-20080502-17015869.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0927 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00084.11.ls Sushi domain (SCR repeat) 184.3 2.7e-52 4 PF00084.11.fs Sushi domain (SCR repeat) 177.1 4.2e-50 4 PF00431.11.fs CUB domain 119.2 7.9e-36 4 PF00431.11.ls CUB domain 101.9 1.7e-27 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00084.11.fs 1/4 445 500 .. 1 65 [] 32.5 2.1e-07 PF00084.11.ls 1/4 445 500 .. 1 65 [] 34.3 3.8e-07 PF00431.11.fs 2/4 504 548 .. 1 48 [. 35.6 1.7e-10 PF00431.11.ls 1/2 504 611 .. 1 116 [] 41.5 9.9e-10 PF00084.11.ls 2/4 619 676 .. 1 65 [] 33.2 8.6e-07 PF00084.11.fs 2/4 619 676 .. 1 65 [] 31.4 4.2e-07 PF00431.11.fs 4/4 680 772 .. 1 104 [. 60.9 3.8e-18 PF00431.11.ls 2/2 680 788 .. 1 116 [] 60.4 5.6e-15 PF00084.11.fs 3/4 797 852 .. 1 65 [] 59.6 9.6e-15 PF00084.11.ls 3/4 797 852 .. 1 65 [] 61.4 2.7e-15 PF00084.11.fs 4/4 861 918 .. 1 65 [] 53.5 6.3e-13 PF00084.11.ls 4/4 861 918 .. 1 65 [] 55.4 1.8e-13 Alignments of top-scoring domains: PF00084.11.fs: domain 1 of 4, from 445 to 500: score 32.5, E = 2.1e-07 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+ ++ G+v++ + G ++++ C+ GY+l+G + +tC+ KIAA0927 445 CN-FPRRPDSGDVTVM--DLHS--GGVAHFHCHLGYELQGAKMLTCI 486 edg.g.GgWsppllgelPkC<-* + ++ +Ws+++ P+C KIAA0927 487 --NaSkPHWSSQE----PIC 500 PF00084.11.ls: domain 1 of 4, from 445 to 500: score 34.3, E = 3.8e-07 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C +p+ ++ G+v++ + G ++++ C+ GY+l+G + +tC+ KIAA0927 445 CN-FPRRPDSGDVTVM--DLHS--GGVAHFHCHLGYELQGAKMLTCI 486 edg.g.GgWsppllgelPkC<-* + ++ +Ws+++ P+C KIAA0927 487 --NaSkPHWSSQE----PIC 500 PF00431.11.fs: domain 2 of 4, from 504 to 548: score 35.6, E = 1.7e-10 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg + ++ G SP YP+ + + +++C+WtI+ap+g++ +L+F KIAA0927 504 CGGAV-HNATIGRVLSPSYPE-NTNGSQFCIWTIEAPEGQK-LHLHF 547 q<-* + KIAA0927 548 E 548 PF00431.11.ls: domain 1 of 2, from 504 to 611: score 41.5, E = 9.9e-10 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg + ++ G SP YP+ + + +++C+WtI+ap+g++ +L+F KIAA0927 504 CGGAV-HNATIGRVLSPSYPE-NTNGSQFCIWTIEAPEGQK-LHLHF 547 qdFdlEdhdgaCgYDyVEirDGlpss.spllGrf..CGgsgiPedirSts + + l +D + +G + ++ l+ + ++ s + e S + KIAA0927 548 ERLLLH------DKDRMTVHSGQTNKsALLYDSLqtE--SVPFEGLLSEG 589 nqmtikFvsDssiqkrGFkaty<-* n+ +i+F+sD +++ F++++ KIAA0927 590 NTIRIEFTSDQARAASTFNIRF 611 PF00084.11.ls: domain 2 of 4, from 619 to 676: score 33.2, E = 8.6e-07 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C P i+NG++++s +ty G+ v++tC++G +l+ +++ i C KIAA0927 619 CY--EPYIQNGNFTTSDPTYNI--GTIVEFTCDPGHSLEQgPAIIEC 661 tedggGg...WsppllgelPkC<-* + + +++ W+ ++ P C KIAA0927 662 I-N--VRdpyWNDTE----PLC 676 PF00084.11.fs: domain 2 of 4, from 619 to 676: score 31.4, E = 4.2e-07 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvG.sssitC C P i+NG++++s +ty G+ v++tC++G +l+ +++ i C KIAA0927 619 CY--EPYIQNGNFTTSDPTYNI--GTIVEFTCDPGHSLEQgPAIIEC 661 tedggGg...WsppllgelPkC<-* + + +++ W+ ++ P C KIAA0927 662 I-N--VRdpyWNDTE----PLC 676 PF00431.11.fs: domain 4 of 4, from 680 to 772: score 60.9, E = 3.8e-18 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l + G+ SPn+P+ pY +C+W I + +++r i+L + KIAA0927 680 CGGE--LSAVAGVVLSPNWPE-PYVEGEDCIWKIHVGEEKR-IFLDI 722 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm q ++l + D + i+DG++ + +lG + G P +S++ + KIAA0927 723 QFLNLS------NSDILTIYDGDEVMPHILGQYLG-NSGPQKLYSSTPDL 765 tikFvsD<-* ti F+sD KIAA0927 766 TIQFHSD 772 PF00431.11.ls: domain 2 of 2, from 680 to 788: score 60.4, E = 5.6e-15 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l + G+ SPn+P+ pY +C+W I + +++r i+L + KIAA0927 680 CGGE--LSAVAGVVLSPNWPE-PYVEGEDCIWKIHVGEEKR-IFLDI 722 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm q ++l + D + i+DG++ + +lG + G P +S++ + KIAA0927 723 QFLNLS------NSDILTIYDGDEVMPHILGQYLG-NSGPQKLYSSTPDL 765 tikFvsDss....iqkrGFkaty<-* ti F+sD + + GF +y KIAA0927 766 TIQFHSDPAglifGKGQGFIMNY 788 PF00084.11.fs: domain 3 of 4, from 797 to 852: score 59.6, E = 9.6e-15 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P+i+NG ++s t+ G +ty+C++GY +vGs+++tC+ KIAA0927 797 CS-DLPEIQNGWKTTSHTELVR--GARITYQCDPGYDIVGSDTLTCQ 840 edggGgWsppllgelPkC<-* d +Ws+ + P C KIAA0927 841 WD--LSWSSDP----PFC 852 PF00084.11.ls: domain 3 of 4, from 797 to 852: score 61.4, E = 2.7e-15 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ ++P+i+NG ++s t+ G +ty+C++GY +vGs+++tC+ KIAA0927 797 CS-DLPEIQNGWKTTSHTELVR--GARITYQCDPGYDIVGSDTLTCQ 840 edggGgWsppllgelPkC<-* d +Ws+ + P C KIAA0927 841 WD--LSWSSDP----PFC 852 PF00084.11.fs: domain 4 of 4, from 861 to 918: score 53.5, E = 6.3e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ +eNG+ + +k+ y G+++t+ C eG++l G+ +i+C+ KIAA0927 861 CD-NPGLPENGYQILYKRLYLP--GESLTFMCYEGFELMGEVTIRCI 904 edgg.GgWsppllgelPkC<-* + ++++W++pl P+C KIAA0927 905 LG-QpSHWNGPL----PVC 918 PF00084.11.ls: domain 4 of 4, from 861 to 918: score 55.4, E = 1.8e-13 *->CplppPdieNGrvssskttyeypvGdtvtytCneGYrlvGsssitCt C+ +p+ +eNG+ + +k+ y G+++t+ C eG++l G+ +i+C+ KIAA0927 861 CD-NPGLPENGYQILYKRLYLP--GESLTFMCYEGFELMGEVTIRCI 904 edgg.GgWsppllgelPkC<-* + ++++W++pl P+C KIAA0927 905 LG-QpSHWNGPL----PVC 918 //