hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16515246/chunk_1/iprscan-20080502-16515246.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0921 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 721.2 2.7e-212 6 SM00181 47.9 1.3e-09 3 SM00294 29.0 0.00064 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00282 1/6 65 203 .. 1 137 [] 126.7 2.5e-33 SM00181 1/3 221 258 .. 1 32 [] 11.8 23 SM00282 2/6 302 444 .. 1 137 [] 114.2 1.4e-29 SM00282 3/6 498 651 .. 1 137 [] 151.7 7.6e-41 SM00181 2/3 678 712 .. 1 32 [] 24.7 0.013 SM00282 4/6 737 866 .. 1 137 [] 94.5 1.2e-23 SM00282 5/6 914 1050 .. 1 137 [] 153.7 1.9e-41 SM00181 3/3 1075 1109 .. 1 32 [] 11.3 26 SM00282 6/6 1137 1264 .. 1 137 [] 80.4 2.3e-19 SM00294 1/1 1603 1621 .. 1 19 [] 29.0 0.00064 Alignments of top-scoring domains: SM00282: domain 1 of 6, from 65 to 203: score 126.7, E = 2.5e-33 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++++sfs+rT ++++lLly+++++++dfl+l Lv dGrl+l KIAA0921 65 SsGELSFSLRTNATRALLLYLDdggDCDFLELLLV------DGRLRL 105 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn r+ l + ++pa+l+ d tp++D +WH V ++r+ r+ L VDg++ KIAA0921 106 RFTLSC---AEPATLQLD----TPVADDRWHMVLLTRDARRTALAVDGEA 148 pvsges...t.LdldkeesgplylGGlPe...........lpvspgFrGC ++ ++ ++++++++ ++l++GG+P++ + + + +++++ p+FrG KIAA0921 149 RAAEVRskrReMQVA----SDLFVGGIPPdvrlsaltlstVKYEPPFRGL 194 irnlrvngk<-* + nl++ ++ KIAA0921 195 LANLKLGER 203 SM00181: domain 1 of 3, from 221 to 258: score 11.8, E = 23 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* Ca+ ++pC nG G C+ ++ C+C G+ g+ C KIAA0921 221 LCAparnPCANG-----GLCTvlapgEVGCdCSHTGFGGkFCS 258 SM00282: domain 2 of 6, from 302 to 444: score 114.2, E = 1.4e-29 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++ FrT + nGl+l++g+ d++ l+L+ G + l++ KIAA0921 302 StDEITLAFRTLQRNGLMLHTGkSADYVNLSLK------SGAVWLVI 342 dlGssttggparltsdsdrptplnDGqWHrVsvern........grsvtL +lGs g+++ ++++ + ++nD+ WH+V+v+rn +++ + + vt+ KIAA0921 343 NLGS----GAFEALVEPV-NGKFNDNAWHDVRVTRNlrqhagigHAMVTI 387 sVDggnpvsges....t.LdldkeesgplylGGlPe......lpvspgFr sVDg ++++g+++++ t L +d + +y+GG P++ + +++pvs++F KIAA0921 388 SVDGILTTTGYTqedyTmLGSD----DFFYIGGSPNtadlpgSPVSNNFM 433 GCirnlrvngk<-* GC++++++ ++ KIAA0921 434 GCLKDVVYKNN 444 SM00282: domain 3 of 6, from 498 to 651: score 151.7, E = 7.6e-41 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv +++sis++FrTt+pnGlLl++ +++ +++ +++++ ++ d++a+eL KIAA0921 498 RtGSISLDFRTTEPNGLLLFSQgrragggagshssaqRADYFAMELL 544 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g ++l+++s +++nDG+W +V ++r+ KIAA0921 545 ------DGHLYLLLDMGS----GGIKLRASS---RKVNDGEWCHVDFQRD 581 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ gr++++sV+ ++++ ++++++ Ldl+ + lylGGlPe+++ + + KIAA0921 582 GRKGSISVN-SRSTPFLAtgdsEiLDLE----SELYLGGLPEggrvdlpl 626 ......lpvspgFrGCirnlrvngk<-* +++ + + ++g++GC+r+l+++g+ KIAA0921 627 ppevwtAALRAGYVGCVRDLFIDGR 651 SM00181: domain 2 of 3, from 678 to 712: score 24.7, E = 0.013 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* Ca+ pC nG G+C+++ + + C+C g G+ g+ Ce KIAA0921 678 QCAsaPCRNG-----GVCRegwnRFICdCIGTGFLGrVCE 712 SM00282: domain 4 of 6, from 737 to 866: score 94.5, E = 1.2e-23 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++s++F + + Gl++ +++++ d l leL +G+ +l KIAA0921 737 EaEDVSLRFMSQRAYGLMMATTsreSADTLRLELD------GGQMKL 777 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn +++lG gp +l ++ +lnD++WH+V+v+r g+s++LsVD KIAA0921 778 TVNLGK----GPETLFAG----HKLNDNEWHTVRVVRRGKSLQLSVD-NV 818 pvsges..t.LdldkeesgplylGGlPe....lpvspgFrGCirnlrvng +v+g + ++ l++ ++ G + e++ ++v ++F G +++l++ng KIAA0921 819 TVEGQMagAhMRLEF---HNIETGIMTErrfiSVVPSNFIGHLSGLVFNG 865 k<-* + KIAA0921 866 Q 866 SM00282: domain 5 of 6, from 914 to 1050: score 153.7, E = 1.9e-41 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr ++++ f+F+Tt+p+GlLl+++++g+df+ +eLv G+++++ KIAA0921 914 AsMHLFFQFKTTAPDGLLLFNSgnGNDFIVIELV------KGYIHYV 954 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ gp+ + +s ++p+nD+qWH V+v+r++g+ tL++D ++ KIAA0921 955 FDLGN----GPSLMKGNS--DKPVNDNQWHNVVVSRDpGNVHTLKID-SR 997 pvsges...t.LdldkeesgplylGGlPe.........lpvspgFrGCir +v+++s++ ++Ldl+ g ly+GGl + ++ ++ +++++gF+GC+ KIAA0921 998 TVTQHSngaRnLDLK----GELYIGGLSKnmfsnlpklVASRDGFQGCLA 1043 nlrvngk<-* ++ +ng+ KIAA0921 1044 SVDLNGR 1050 SM00181: domain 3 of 3, from 1075 to 1109: score 11.3, E = 26 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg..rCe<-* C ++ C n G+C+ +++tC+C +g++ C KIAA0921 1075 TCTeeSCANQ-----GVCLqqwdGFTCdCT-MTSYGgpVCN 1109 SM00282: domain 6 of 6, from 1137 to 1264: score 80.4, E = 2.3e-19 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv + ++ + F T + +++L+ +++ ++ gd+l+l++ +G++ KIAA0921 1137 RmDRLAVGFSTHQRSAVLVRVDsasgLGDYLQLHID------QGTVG 1177 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg + ++ G ++ ++ +++ ++DG++H V+++r+g+++tL+VD + KIAA0921 1178 VIFNVGT---DDITIDEPN----AIVSDGKYHVVRFTRSGGNATLQVD-S 1219 npvsges......t.LdldkeesgplylGGlPelpvspgFrGCirnlrvn pv+++ + +++ t ++++ + + +GG+ +F+G +++l++n KIAA0921 1220 WPVNERYpagrqlTiFNSQ----AAIKIGGRD---QGRPFQGQVSGLYYN 1262 gk<-* g KIAA0921 1263 GL 1264 SM00294: domain 1 of 1, from 1603 to 1621: score 29.0, E = 0.00064 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSY ++ +++ KIAA0921 1603 MYKYRNRDEGSYQVDQSRN 1621 //