# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02592.fasta.huge -Q ../query/KIAA0920.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0920, 1134 aa
 vs ./tmplib.23663 library

1986371 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.6711+/-0.00848; mu= -1.5513+/- 0.576
 mean_var=344.8592+/-81.889, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.069064

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0270  ( 345 res)   ha06636                     ( 345)  234 37.2  0.0049


>>KIAA0270  ( 345 res)   ha06636                          (345 aa)
 initn: 250 init1: 212 opt: 234  Z-score: 146.4  bits: 37.2 E(): 0.0049
Smith-Waterman score: 234;  27.602% identity (57.466% similar) in 221 aa overlap (70-281:1-214)

      40        50        60        70        80        90         
KIAA09 ERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTAEEEEARRR
                                     :: :::.:::.:::.: :....: .:  ::
KIAA02                               QHLKSKALRERWLLEGTPSSASEGDEDLRR
                                             10        20        30

     100       110       120       130             140       150   
KIAA09 QSEEDEFRVKQLEDNIQRLEQEIQTLESEESQ-ISAKEQI-----ILEKLKETEKSFKDF
       : ..:: ... :::...:::.::..::  .:   .:::.      .        :  .  
KIAA02 QMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKT
               40        50        60        70        80        90

           160       170       180       190       200          210
KIAA09 QKGFSSTDGDAVNYISSQLPDLPILCSRTAEPSPGQDGTSRAAGVGWENVLLKE---GES
       .  ..: .  . .  .... . :.   ::.. :: .    .::  . : .. :.   ::.
KIAA02 EVVMNSQQTPVGTPKDKRVSNTPL---RTVDGSPMM----KAAMYSVEITVEKDKVTGET
              100       110          120           130       140   

              220       230       240       250       260       270
KIAA09 ASNATETSGPDMTIKKPPQLSEDDIWLKSEGDNYSATLLEPAASSLSPDHKNMEIEVSVA
          .. :  : . .    .. ::.  .    :. . . ..: .::   .  .   ::...
KIAA02 RVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLS
           150       160       170       180       190       200   

              280       290       300       310       320       330
KIAA09 ECKSVPGITSTPHPMDHPSAFYSPPHNGLLTDHHESLDNDVAREIRYLDEVLEANCCDSA
       :  :. : . :                                                 
KIAA02 EAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGY
           210       220       230       240       250       260   




1134 residues in 1 query   sequences
1986371 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:29 2008 done: Thu Dec 18 15:21:30 2008
 Total Scan time:  0.740 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]