hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16483957/chunk_1/iprscan-20080502-16483957.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0919 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04091.3.fs Exocyst complex subunit Sec15-like 423.8 2.2e-124 1 PF04091.3.ls Exocyst complex subunit Sec15-like 233.5 4.2e-67 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04091.3.fs 1/1 502 698 .. 1 213 [. 423.8 2.2e-124 PF04091.3.ls 1/1 502 710 .] 1 395 [] 233.5 4.2e-67 Alignments of top-scoring domains: PF04091.3.fs: domain 1 of 1, from 502 to 698: score 423.8, E = 2.2e-124 *->eYekvIkkCWmKEGEHFPFqdptlEkqPFPkkfPFSpmvPlvYtqaK +Y+kv+++ FPFqd++lEkqPFPkkfPFS++vP+vY+q+K KIAA0919 502 MYKKVVGQ--------FPFQDIELEKQPFPKKFPFSEFVPKVYNQIK 540 kFiyaclkFledlvlssteVddNmvrKsanlLLtRslsgkLksllrkpsi +FiyaclkF+edl+lssteVdd m+rKs+nlLLtR+ls++L++++++++i KIAA0919 541 EFIYACLKFSEDLHLSSTEVDD-MIRKSTNLLLTRTLSNSLQNVIKRKNI 589 sLtqLvQIiiNltyLEkackeLeeFitnetnieqetvetssSnnVlytEs +Lt+LvQIiiN+t+LEk+ck+LeeFitn+tn+ +etv+t++ ly + KIAA0919 590 GLTELVQIIINTTHLEKSCKYLEEFITNITNVLPETVHTTK----LY--G 633 lktfadARkaAEkeiiekinsKIDefleLaeYDWtltevrgdaSgyiiDL ++tf+dAR+aAE+ei++++n+KID+fl+La+YDW++++++++aS+y++DL KIAA0919 634 TTTFKDARHAAEEEIYTNLNQKIDQFLQLADYDWMTGDLGNKASDYLVDL 683 inFLqstFasflanLP<-* i+FL+stFa+f+ +LP KIAA0919 684 IAFLRSTFAVFT-HLP 698 PF04091.3.ls: domain 1 of 1, from 502 to 710: score 233.5, E = 4.2e-67 *->eYekvIkkCWmKEGEHFPFqdptlEkqPFPkkfPFSpmvPlvYtqaK +Y+kv+++ FPFqd++lEkqPFPkkfPFS++vP+vY+q+K KIAA0919 502 MYKKVVGQ--------FPFQDIELEKQPFPKKFPFSEFVPKVYNQIK 540 kFiyaclkFledlvlssteVddNmvrKsanlLLtRslsgkLksllrkpsi +FiyaclkF+edl+lssteVdd m+rKs+nlLLtR+ls++L++++++++i KIAA0919 541 EFIYACLKFSEDLHLSSTEVDD-MIRKSTNLLLTRTLSNSLQNVIKRKNI 589 sLtqLvQIiiNltyLEkackeLeeFitnetnieqetvetssSnnVlytEs +Lt+LvQIiiN+t+LEk+ck+LeeFitn+tn+ +etv+t++ ly + KIAA0919 590 GLTELVQIIINTTHLEKSCKYLEEFITNITNVLPETVHTTK----LY--G 633 lktfadARkaAEkeiiekinsKIDefleLaeYDWtltevrgdaSgyiiDL ++tf+dAR+aAE+ei++++n+KID+fl+La+YDW++++++++aS+y++DL KIAA0919 634 TTTFKDARHAAEEEIYTNLNQKIDQFLQLADYDWMTGDLGNKASDYLVDL 683 inFLqstFasflanLPkhvaqlvclrtfdHLatslmdLLldpevkqIttg i+FL+stFa+f+ +LP KIAA0919 684 IAFLRSTFAVFT-HLP---------------------------------- 698 AleqFnLDVmqcEsFaariFePVPGTiDSNGfqsPmTPSTPTFPNANGVD V G s KIAA0919 699 ----------------------VS------G--S---------------- 702 APTLFENNiktLsltFieLRQLldLLitddwstYladygklrkKYlRvqp KIAA0919 - -------------------------------------------------- - etAivlLEKikefskknegFaglrknvidNdskkllstvakqlralei<- ++ l i KIAA0919 703 ------------------------CSYF----------------VLYI 710 * KIAA0919 - - //