hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16450552/chunk_1/iprscan-20080502-16450552.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0917 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00995.13.ls Sec1 family 953.8 6.3e-284 1 PF00995.13.fs Sec1 family 951.7 2.6e-283 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00995.13.fs 1/1 49 642 .. 1 688 [] 951.7 2.6e-283 PF00995.13.ls 1/1 49 642 .. 1 688 [] 953.8 6.3e-284 Alignments of top-scoring domains: PF00995.13.fs: domain 1 of 1, from 49 to 642: score 951.7, E = 2.6e-283 *->wKVLvlDrdRttpilSscatvseLleTPVhgItlvedIenkrepepl wKVL++Dr+ +++i+S++++v+eL++ +gItl+++++++r+ p+ KIAA0917 49 WKVLIYDRF-GQDIISPLLSVKELRD---MGITLHLLLHSDRD--PI 89 pdvkAvyFlsrPTeenidrLiDYIqdlrsenrkpkYseyhifFtRWnEWv pdv+AvyF++ PTeenidr++ qdlr n ++Y++y+++F+ + + KIAA0917 90 PDVPAVYFVM-PTEENIDRMC---QDLR--N--QLYESYYLNFI--S--A 127 iprsllerLaeadvaegavnavksvkEiyldFiplesDLFSLdspdenll i+rs+le++a+a++a+ av++v++v+++yl+Fi le+D+F+L++++++l+ KIAA0917 128 ISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELV 177 afrllyspgtNmYYPNRltaeedealleriaVLdgLftLcRRatlgeiPi ++r++++p++ t++e+e+++++i+ d+Lf+++ +tlg +Pi KIAA0917 178 SYRAINRPDI--------TDTEMETVMDTIV--DSLFCFF--VTLGAVPI 215 sIRykggseraaeklAkkveqkLrenykadenslfegrrvgeGllsktrp IR+ +g aae++A+k+++kLren+++++nslf+g+ +g G++s++rp KIAA0917 216 -IRCSRGT--AAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRP 262 qLLILDRnvDpiTPLLhqlTYQAmvhDllgIennrVkleeesf.eNetpG +L+++DRn+D++TPL+h++TYQA+vhD+l++++nrV+lee+s+ eN++ G KIAA0917 263 LLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGvENSPAG 312 igekrkpeKevdLdekanDefWvelrhlnFaeVgeevkkllkeyqekkde +++krk++K++dL + D+fW+++++++F+eV+e v+++l++y++++de KIAA0917 313 ARPKRKNKKSYDLTP--VDKFWQKHKGSPFPEVAESVQQELESYRAQEDE 360 ikradksiGlsGedeaAnslladdtadlkqfVkklPqlqkekglistHts +kr+++++Gl+Gede+A+s+l+d+ta+l+++V++lP+l+++k+li++Ht+ KIAA0917 361 VKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTN 410 laeeilkvvkkrYnldkllevEQdLasgtdaeGEKiKdalndiielLidk +a+++l+++k+r +ld+++e+E++++s+t+++ ++l+dii + + KIAA0917 411 VATAVLEHIKAR-KLDVYFEYEEKIMSKTTLD-----KSLLDIISD--PD 452 avsledkLRLilLYsLcknglsPenkvenllkllqhqgygpealktvsnL a+++edk+RL+l+Y+++ +++++e+++e+++k+l+++g++++ l++++++ KIAA0917 453 AGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQW 502 kklGllssktggddllitesksskkqseptYIQWFgkktisettrqlsgw k + + s ++ ++ t +k +++++r ++ + KIAA0917 503 KAFTKMASAPA--------------SYGST-----TTKPMGLLSRVMNTG 533 vpfimdgvenlypqhhnFseldLkksrdmaylssgfrvsLdsplipqllg ++f+m+gv+nl+ +++n L++++i ++l+ KIAA0917 534 SQFVMEGVKNLVLKQQN----------------------LPVTRILDNLM 561 rssknkltedvyarlgpkikrksdsktrvqkkrrsgelHAqdiIVFvvGG ++++n++t+d y +++pk++r++ds +v++++ ++ q++IVFvvGG KIAA0917 562 EMKSNPETDD-YRYFDPKMLRGNDS--SVPRNKNPF----QEAIVFVVGG 604 vTysEaralrelnkakkgkgigkrviiggTailNpkkfLdei<-* ++y+E+++l++++k k+g k++++g+++++N+++f++++ KIAA0917 605 GNYIEYQNLVDYIKGKQG----KHILYGCSELFNATQFIKQL 642 PF00995.13.ls: domain 1 of 1, from 49 to 642: score 953.8, E = 6.3e-284 *->wKVLvlDrdRttpilSscatvseLleTPVhgItlvedIenkrepepl wKVL++Dr+ +++i+S++++v+eL++ +gItl+++++++r+ p+ KIAA0917 49 WKVLIYDRF-GQDIISPLLSVKELRD---MGITLHLLLHSDRD--PI 89 pdvkAvyFlsrPTeenidrLiDYIqdlrsenrkpkYseyhifFtRWnEWv pdv+AvyF++ PTeenidr++ qdlr n ++Y++y+++F+ + + KIAA0917 90 PDVPAVYFVM-PTEENIDRMC---QDLR--N--QLYESYYLNFI--S--A 127 iprsllerLaeadvaegavnavksvkEiyldFiplesDLFSLdspdenll i+rs+le++a+a++a+ av++v++v+++yl+Fi le+D+F+L++++++l+ KIAA0917 128 ISRSKLEDIANAALAASAVTQVAKVFDQYLNFITLEDDMFVLCNQNKELV 177 afrllyspgtNmYYPNRltaeedealleriaVLdgLftLcRRatlgeiPi ++r++++p++ t++e+e+++++i+ d+Lf+++ +tlg +Pi KIAA0917 178 SYRAINRPDI--------TDTEMETVMDTIV--DSLFCFF--VTLGAVPI 215 sIRykggseraaeklAkkveqkLrenykadenslfegrrvgeGllsktrp IR+ +g aae++A+k+++kLren+++++nslf+g+ +g G++s++rp KIAA0917 216 -IRCSRGT--AAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRP 262 qLLILDRnvDpiTPLLhqlTYQAmvhDllgIennrVkleeesf.eNetpG +L+++DRn+D++TPL+h++TYQA+vhD+l++++nrV+lee+s+ eN++ G KIAA0917 263 LLVLVDRNIDLATPLHHTWTYQALVHDVLDFHLNRVNLEESSGvENSPAG 312 igekrkpeKevdLdekanDefWvelrhlnFaeVgeevkkllkeyqekkde +++krk++K++dL + D+fW+++++++F+eV+e v+++l++y++++de KIAA0917 313 ARPKRKNKKSYDLTP--VDKFWQKHKGSPFPEVAESVQQELESYRAQEDE 360 ikradksiGlsGedeaAnslladdtadlkqfVkklPqlqkekglistHts +kr+++++Gl+Gede+A+s+l+d+ta+l+++V++lP+l+++k+li++Ht+ KIAA0917 361 VKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTN 410 laeeilkvvkkrYnldkllevEQdLasgtdaeGEKiKdalndiielLidk +a+++l+++k+r +ld+++e+E++++s+t+++ ++l+dii + + KIAA0917 411 VATAVLEHIKAR-KLDVYFEYEEKIMSKTTLD-----KSLLDIISD--PD 452 avsledkLRLilLYsLcknglsPenkvenllkllqhqgygpealktvsnL a+++edk+RL+l+Y+++ +++++e+++e+++k+l+++g++++ l++++++ KIAA0917 453 AGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPLQYIKQW 502 kklGllssktggddllitesksskkqseptYIQWFgkktisettrqlsgw k + + s ++ ++ t +k +++++r ++ + KIAA0917 503 KAFTKMASAPA--------------SYGST-----TTKPMGLLSRVMNTG 533 vpfimdgvenlypqhhnFseldLkksrdmaylssgfrvsLdsplipqllg ++f+m+gv+nl+ +++n L++++i ++l+ KIAA0917 534 SQFVMEGVKNLVLKQQN----------------------LPVTRILDNLM 561 rssknkltedvyarlgpkikrksdsktrvqkkrrsgelHAqdiIVFvvGG ++++n++t+d y +++pk++r++ds +v++++ ++ q++IVFvvGG KIAA0917 562 EMKSNPETDD-YRYFDPKMLRGNDS--SVPRNKNPF----QEAIVFVVGG 604 vTysEaralrelnkakkgkgigkrviiggTailNpkkfLdei<-* ++y+E+++l++++k k+g k++++g+++++N+++f++++ KIAA0917 605 GNYIEYQNLVDYIKGKQG----KHILYGCSELFNATQFIKQL 642 //