hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/Pfam
Sequence file:            /cdna/full/goal/fh/fh07519s2/w3open/interpro/cnk_1/seq.in
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Query:  fh07519s2  1881

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SWIM     SWIM zinc finger                                22.2     0.0079   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SWIM       1/1     257   293 ..     1    37 []    22.2   0.0079

Alignments of top-scoring domains:
SWIM: domain 1 of 1, from 257 to 293: score 22.2, E = 0.0079
                   *->yrVqldld...lvkasCsCpdfqlygipCkHalAvllalg<-*
                      y V + +d+ ++  +sC+C++      +C H++A++l ++   
   fh07519s2   257    YNVAVMFDrcrVTSCSCTCGA---GAKCCTHVVALCLFRI    293  

//