# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh07519s2.fasta.huge -Q ../query/KIAA0913.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0913, 1881 aa
 vs ./tmplib.23663 library

1985624 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.5460+/-0.00985; mu= 0.7701+/- 0.670
 mean_var=399.3065+/-93.409, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.064183

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1511  ( 1253 res)   fg04486(revised)           (1253)  570 68.4 1.2e-11


>>KIAA1511  ( 1253 res)   fg04486(revised)                (1253 aa)
 initn: 835 init1: 253 opt: 570  Z-score: 300.8  bits: 68.4 E(): 1.2e-11
Smith-Waterman score: 719;  30.756% identity (51.933% similar) in 595 aa overlap (39-558:4-538)

       10        20        30        40        50        60        
KIAA09 LSLGDWPRSPLAPRCWARPGPVSFPGLRFSPGTAALSAPATPSPGSPLRPRAS----PQP
                                     :   .  ::. :. :::: : .:    :.:
KIAA15                            AGRPRLPSRRAPG-PGRGSPLGPAGSRVLSPRP
                                          10         20        30  

           70        80        90       100       110       120    
KIAA09 PAGGPGPGSAGGDPAPGGAGPMELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQ
       :       . :. : ::.    :        ..  .. :. . ::    : .: :.  : 
KIAA15 PRRHRWALARGAWPWPGSPPQPEQPPPPQSVSQSPAMADGGEREELLSPSPVSPAKRQC-
             40        50        60        70        80        90  

          130       140         150          160         170       
KIAA09 NWRGWRKQSAGPNSPTG--GGGGGGSGGTRMRDGL---VIP--LVELSAKQVAFHIPFEV
       .: .   :.  : .  :  :::.:: :.. .  :    . :  :.. .:: :: .  .: 
KIAA15 SWPS--PQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQPDSLLDCAAKTVAEKWAYER
               100       110       120       130       140         

       180       190       200       210                           
KIAA09 VEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCL----------ANGSADE---------
       ::. .  .:: .: ::..::::.::..: .:: .          :.:.:           
KIAA15 VEERFERIPEPVQRRIVYWSFPRNEREICMYSSFQYRGGPGAGAAGGAAGASPAEEGPQP
     150       160       170       180       190       200         

                                            220       230       240
KIAA09 --------------------------------------FQRGDQLFRMRAVKDPLQIGFH
                                             :.:: .:.   .:.. ::.:::
KIAA15 PPGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENVLQVGFH
     210       220       230       240       250       260         

               250       260       270       280        290        
KIAA09 LSATVVP-PQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKC-CTHVVALCLFRIHNASA
       ::.::.       :  .:.::. ::::..:: .: ::      :.::::: :.::.. . 
KIAA15 LSGTVTELATASEPAVTYKVAISFDRCKITSVTCGCGNKDIFYCAHVVALSLYRIRKPDQ
     270       280       290       300       310       320         

      300       310       320       330       340       350        
KIAA09 VCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAP
       : :: :.::.: ...::::::: ::::.    ..:::::.: ::.:::.:  :: : :::
KIAA15 VKLRLPISETLFQMNRDQLQKFIQYLITAHHTEVLPTAQKLADEILSSNSE-INQVNGAP
     330       340       350       360       370       380         

      360       370       380         390       400       410      
KIAA09 DPTAGPSASDQSTWYLDESTLTDNIKKTLHK--FCGPSPVVFSDVNSMYLSSTEPPAAAE
       ::::: : .:.. :.:::  . ...:  : .  .:: .    ...:::. .         
KIAA15 DPTAGASIDDENCWHLDEEQVKEQVKLFLSQGGYCGSG----KQLNSMFAK---------
      390       400       410       420           430              

        420       430       440       450       460       470      
KIAA09 WACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRT
                             ::::.. ::::.: .: ..:.: ..  ..: :      
KIAA15 ----------------------VREMLRMRDSNGARMLTLITEQFVADPRLTLW------
                               440       450       460             

        480       490       500       510       520       530      
KIAA09 SASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCTQLRQW
                   :..: .   .  : .. ::. .::   .:.:  . ...     ::..:
KIAA15 ------------RQQGTN--MTDKCRQLWDELGALWVCIILNPHCKLEEKSCWLQQLQKW
                   470         480       490       500       510   

         540         550       560       570       580       590   
KIAA09 Q-LKV--IENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCW
       . : :  .:. . :..  ..   .:                                   
KIAA15 SDLDVCPLEDGNYGHELPNITNALPQSAIHSPDSLSRPRRTVFTRAIEGRELHWQDSHLQ
           520       530       540       550       560       570   




1881 residues in 1 query   sequences
1985624 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:13 2008 done: Thu Dec 18 15:21:14 2008
 Total Scan time:  0.980 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]