# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk10449.fasta.huge -Q ../query/KIAA0908.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0908, 506 aa vs ./tmplib.23663 library 1986999 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.9496+/-0.00426; mu= 17.7392+/- 0.291 mean_var=63.9460+/-14.608, 0's: 0 Z-trim: 3 B-trim: 9 in 2/38 Lambda= 0.160386 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0601 ( 886 res) hg00838a ( 886) 124 38.0 0.0033 >>KIAA0601 ( 886 res) hg00838a (886 aa) initn: 134 init1: 49 opt: 124 Z-score: 149.4 bits: 38.0 E(): 0.0033 Smith-Waterman score: 124; 41.667% identity (66.667% similar) in 60 aa overlap (37-96:314-371) 10 20 30 40 50 60 KIAA09 AELVSSLLGLWLLLCSCGCPEGAELRAPPDKIAIIGAGIGGTSAAYYLRQKFGKDVKIDL :. :::.:..: .:: : :.:: :: . : KIAA06 HRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQL-QSFGMDVTL-L 290 300 310 320 330 340 70 80 90 100 110 120 KIAA09 FEREEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGLSAVQASGGLLGIYNGET :..::::.::. . . :. :. : KIAA06 EARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANG 350 360 370 380 390 400 506 residues in 1 query sequences 1986999 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:21:00 2008 done: Thu Dec 18 15:21:01 2008 Total Scan time: 0.450 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]