hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16250057/chunk_1/iprscan-20080502-16250057.nocrc
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Query sequence: KIAA0905
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 104.5    1.3e-26   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      65   111 ..     1    46 []     6.3       49
SM00320    2/6     120   160 ..     1    46 []    22.3    0.068
SM00320    3/6     167   206 ..     1    46 []    17.3     0.89
SM00320    4/6     209   254 ..     1    46 []    10.3       11
SM00320    5/6     258   298 ..     1    46 []    22.6    0.053
SM00320    6/6     301   341 ..     1    46 []    25.5   0.0071

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 65 to 111: score 6.3, E = 49
                   *->t.kllrtlk.gHtgespVtsvafspdggss..dspnllasgs.Dgti
                      + k ++t+++ H+     + + + p   +s++d + +l++g+++g+i
    KIAA0905    65    DmKSCATFSsSHRY----HKLIWGPYKMDSkgDVSGVLIAGGeNGNI 107  

                   rlWd<-*
                    l+d   
    KIAA0905   108 ILYD    111  

SM00320: domain 2 of 6, from 120 to 160: score 22.3, E = 0.068
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  +++  + Htg  pV++++++        +nl+asg + + i++W
    KIAA0905   120    KeVVIAQNDKHTG--PVRALDVNIFQ-----TNLVASGAnESEIYIW 159  

                   d<-*
                   d   
    KIAA0905   160 D    160  

SM00320: domain 3 of 6, from 167 to 206: score 17.3, E = 0.89
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++ ++ +      +++++a++         ++las+s+ g   +W
    KIAA0905   167    PmTPGAKTQ-PPE--DISCIAWNRQV-----QHILASASpSGRATVW 205  

                   d<-*
                   d   
    KIAA0905   206 D    206  

SM00320: domain 4 of 6, from 209 to 254: score 10.3, E = 11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt...i
                      +++++ + + H++   ++++a++pd       ++++ +s+D   + i
    KIAA0905   209    KnEPIIKVSDHSNRMHCSGLAWHPDV-----ATQMVLASeDDRlpvI 250  

                   rlWd<-*
                    +Wd   
    KIAA0905   251 QMWD    254  

SM00320: domain 5 of 6, from 258 to 298: score 22.6, E = 0.053
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++lr+l+ H    +++++a+s  +     p+ll+s+++D +i + 
    KIAA0905   258    AsSPLRVLENHAR--GILAIAWSMAD-----PELLLSCGkDAKILCS 297  

                   d<-*
                   +   
    KIAA0905   298 N    298  

SM00320: domain 6 of 6, from 301 to 341: score 25.5, E = 0.0071
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+++l++l+  t+  ++ +++++p +     p +l ++s Dg i ++
    KIAA0905   301    TgEVLYELPTNTQ--WCFDIQWCPRN-----PAVLSAASfDGRISVY 340  

                   d<-*
                   +   
    KIAA0905   341 S    341  

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