hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16250057/chunk_1/iprscan-20080502-16250057.nocrc
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Query sequence: KIAA0905
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        72.8      1e-18   5
PF00400.22.fs WD domain, G-beta repeat                        67.8    3.9e-18   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   2/5     121   160 ..     1    38 []    17.6  0.00055
PF00400.22.fs   3/5     180   206 ..    12    38 .]    11.3    0.033
PF00400.22.fs   4/5     259   294 ..     1    34 [.    16.0   0.0015
PF00400.22.fs   5/5     302   341 ..     1    38 []    21.3    5e-05
PF00400.22.ls   5/5     302   341 ..     1    38 []    23.3  0.00082

Alignments of top-scoring domains:
PF00400.22.fs: domain 2 of 5, from 121 to 160: score 17.6, E = 0.00055
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++   + Ht++V++++++  + +l+asg     i+iWd   
    KIAA0905   121    EVVIaQNdKHTGPVRALDVNIFQTNLVASGANESEIYIWD    160  

PF00400.22.fs: domain 3 of 5, from 180 to 206: score 11.3, E = 0.033
                   *->VtcvafspdsgpllasgSrDgtikiWd<-*
                      ++c+a++   +++las+S  g   +Wd   
    KIAA0905   180    ISCIAWNRQVQHILASASPSGRATVWD    206  

PF00400.22.fs: domain 4 of 5, from 259 to 294: score 16.0, E = 0.0015
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgti<-*
                        +++vl+ H  ++ ++a+s  +++ll+s++ D +i   
    KIAA0905   259    SSPLrVLeNHARGILAIAWSMADPELLLSCGKDAKI    294  

PF00400.22.fs: domain 5 of 5, from 302 to 341: score 21.3, E = 5e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge++ +l+  t ++ ++ ++p ++ +l  +S Dg i +++   
    KIAA0905   302    GEVLyELpTNTQWCFDIQWCPRNPAVLSAASFDGRISVYS    341  

PF00400.22.ls: domain 5 of 5, from 302 to 341: score 23.3, E = 0.00082
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge++ +l+  t ++ ++ ++p ++ +l  +S Dg i +++   
    KIAA0905   302    GEVLyELpTNTQWCFDIQWCPRNPAVLSAASFDGRISVYS    341  

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