hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16232372/chunk_1/iprscan-20080502-16232372.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0904
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 332.7    2.5e-95   1
SM00219                                                  20.7      2e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     781  1074 ..     1   280 []    20.7    2e-12
SM00220    1/1     781  1074 ..     1   231 []   332.7  2.5e-95

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 781 to 1074: score 20.7, E = 2e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                         + ++GeG +G+Vyk++ k++++ VA K+++ d ++++     +r
    KIAA0904   781    FDIIGIIGEGTYGQVYKAKDKdtgELVALKKVRLDNekegfPITAIR 827  

                   EakiMkklGgkHpNiVkLlGvcteegrr..F.mevePlmivmEymegGdL
                   E+ki+++l   H  +V++  ++t+++   +F+   +  ++v+Eym++ dL
    KIAA0904   828 EIKILRQL--IHRSVVNMKEIVTDKQDAldFkKDKGAFYLVFEYMDH-DL 874  

                   ldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgen
                      L +   ++s ++  sf+ Q  +G eY ++knf HRD+ + N+L+++ 
    KIAA0904   875 MGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNS 924  

                   kvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl.
                   +++K +DFGL+R   ++    es  y       ++   + +   +PE l 
    KIAA0904   925 GQIKLADFGLARLYNSE----ESRPYT------NKV--ITLWYRPPELLl 962  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                    + ++t++ DVWS G  L E+ft       +     ++ +++    +   
    KIAA0904   963 GEERYTPAIDVWSCGCILGELFTKKPIFQAN-----LELAQLELISRLC- 1006 

                   RlpkPendlpiS.........................svtCPdelYdlMl
                     p+P+      ++  + +  ++ +++++ +++ ++++   P++  dl  
    KIAA0904  1007 GSPCPAV----WpdviklpyfntmkpkkqyrrrlreeFSFIPSAALDLLD 1052 

                   qCWaedPedRPtFsel..verl<-*
                        dP++R+t ++  + ++l   
    KIAA0904  1053 HMLTLDPSKRCTAEQTlqSDFL    1074 

SM00220: domain 1 of 1, from 781 to 1074: score 332.7, E = 2.5e-95
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      ++++ ++G+G++G+Vy+a+dk+tg+lvA+K+++ ++++++ +++++r
    KIAA0904   781    FDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRldnekegfpITAIR 827  

                   EikiLkk.dHPNIVkLydvfed...........dklylVmEyceGdlGdL
                   EikiL++  H  +V+++++  d+++  + +++++ +ylV+Ey+++   dL
    KIAA0904   828 EIKILRQlIHRSVVNMKEIVTDkqdaldfkkdkGAFYLVFEYMDH---DL 874  

                   fdllkkrgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNi
                   + ll++   +     +sE++++++++Q+ ++LeY+H+++++HRD+K +Ni
    KIAA0904   875 MGLLESGLVH-----FSEdHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNI 919  

                   LLds..hvKlaDFGlArql........ttfvGTpeYmAPEvl....gYgk
                   LL++++++KlaDFGlAr+++++++++ t  v T++Y++PE+l +++ Y++
    KIAA0904   920 LLNNsgQIKLADFGLARLYnseesrpyTNKVITLWYRPPELLlgeeRYTP 969  

                   pavDiWSlGcilyElltGkpPFp......qldlifkkig...........
                    a+D+WS+Gcil El+t kp F+ + +  ql+li +++g++ +  +++  
    KIAA0904   970 -AIDVWSCGCILGELFTKKPIFQanlelaQLELISRLCGspcpavwpdvi 1018 

                   .........................SpeakdLikklLvkdPekRlta.ea
                   + ++ ++ ++++ ++++ +++ +  ++ a+dL++++L+ dP+kR ta++ 
    KIAA0904  1019 klpyfntmkpkkqyrrrlreefsfiPSAALDLLDHMLTLDPSKRCTAeQT 1068 

                   LedeldikaHPff<-*
                   L+         f+   
    KIAA0904  1069 LQ-------SDFL    1074 

//