hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16232372/chunk_1/iprscan-20080502-16232372.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0904 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 335.0 1.2e-97 1 PF00069.15.fs Protein kinase domain 333.0 4.6e-97 1 PF07714.7.fs Protein tyrosine kinase 84.6 1.9e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 781 1074 .. 1 287 [] 333.0 4.6e-97 PF07714.7.fs 1/1 781 985 .. 1 211 [. 84.6 1.9e-24 PF00069.15.ls 1/1 781 1074 .. 1 287 [] 335.0 1.2e-97 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 781 to 1074: score 333.0, E = 4.6e-97 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + +++++G+G++G+Vykak+k+tg++VA+K++++++ek+++++ta+r KIAA0904 781 FDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIR 827 lsEiqilkrLsHpNIvrlidvfed..........kdhlylVlEycegGL. Ei+il+ L H +v ++++++d+++ + +++k+ ylV+Ey++++L KIAA0904 828 --EIKILRQLIHRSVVNMKEIVTDkqdaldfkkdKGAFYLVFEYMDHDLm 875 rvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLK ++l+ + sed++k++++Q+ +gleY+H+++++HRD+K KIAA0904 876 GLLESG--------LVHF--SEDHIKSFMKQLMEGLEYCHKKNFLHRDIK 915 PeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl +NILl+n g++ K+aDFGlA++++ + s+++t v T+wY++PE+l KIAA0904 916 CSNILLNNSGQI----KLADFGLARLYNSeESRpYTNKVITLWYRPPELL 961 lggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgp lg + y++++DvWS+G+il el+t+kp+F+ +l ql+li + g KIAA0904 962 LGEERYTPAIDVWSCGCILGELFTKKPIFQAN---LeLAQLELISRLCGS 1008 plefdspewdsisrse.fr.........r.l.pnlseeakdLikkcLnkD p + +p + +++++ +++++ +++ r+ ++++a+dL++ +L++D KIAA0904 1009 PCPAVWPDVIKLPYFNtMKpkkqyrrrlReEfSFIPSAALDLLDHMLTLD 1058 PskRltaeeilqHPwf<-* PskR+tae+ lq++++ KIAA0904 1059 PSKRCTAEQTLQSDFL 1074 PF07714.7.fs: domain 1 of 1, from 781 to 985: score 84.6, E = 1.9e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLk.....eigas + ++ +GeG +G Vyk++ k +t+ VA K+++ ++++e g KIAA0904 781 FDIIGIIGEGTYGQVYKAKDK----DTGELVALKKVRldnekE-GFP 822 eeeieredFlrEAsiMkklGdHpNiVrLlGvct.........kegePggp + +rE++i+++l H +V++ ++t++++ + +k+++ KIAA0904 823 ITA------IREIKILRQL-IHRSVVNMKEIVTdkqdaldfkKDKGA--- 862 glyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn y+V+Eym + dL L + +++ ++ sf+ Q +G+eY + kn KIAA0904 863 -FYLVFEYMDH-DLMGLLESG--LVHFSEDHIKSFMKQLMEGLEYCHKKN 908 fvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm f HRD+ + N+L+++++++K +DFGLaR+ yn ++ r ++ + KIAA0904 909 FLHRDIKCSNILLNNSGQIKLADFGLARL-YNSEES-RPYTNKVITLWYR 956 APEslkygk.FtskSDVWSFGVlLWEift<-* +PE l +++t + DVWS G+ L E+ft KIAA0904 957 PPELLLGEErYTPAIDVWSCGCILGELFT 985 PF00069.15.ls: domain 1 of 1, from 781 to 1074: score 335.0, E = 1.2e-97 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr + +++++G+G++G+Vykak+k+tg++VA+K++++++ek+++++ta+r KIAA0904 781 FDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIR 827 lsEiqilkrLsHpNIvrlidvfed..........kdhlylVlEycegGL. Ei+il+ L H +v ++++++d+++ + +++k+ ylV+Ey++++L KIAA0904 828 --EIKILRQLIHRSVVNMKEIVTDkqdaldfkkdKGAFYLVFEYMDHDLm 875 rvldLfdylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLK ++l+ + sed++k++++Q+ +gleY+H+++++HRD+K KIAA0904 876 GLLESG--------LVHF--SEDHIKSFMKQLMEGLEYCHKKNFLHRDIK 915 PeNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvl +NILl+n g++ K+aDFGlA++++ + s+++t v T+wY++PE+l KIAA0904 916 CSNILLNNSGQI----KLADFGLARLYNSeESRpYTNKVITLWYRPPELL 961 lggngygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgp lg + y++++DvWS+G+il el+t+kp+F+ +l ql+li + g KIAA0904 962 LGEERYTPAIDVWSCGCILGELFTKKPIFQAN---LeLAQLELISRLCGS 1008 plefdspewdsisrse.fr.........r.l.pnlseeakdLikkcLnkD p + +p + +++++ +++++ +++ r+ ++++a+dL++ +L++D KIAA0904 1009 PCPAVWPDVIKLPYFNtMKpkkqyrrrlReEfSFIPSAALDLLDHMLTLD 1058 PskRltaeeilqHPwf<-* PskR+tae+ lq++++ KIAA0904 1059 PSKRCTAEQTLQSDFL 1074 //