hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16200892/chunk_1/iprscan-20080502-16200892.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0902 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06663.4.ls Protein of unknown function (DUF1170) 489.3 4.3e-144 1 PF06663.4.fs Protein of unknown function (DUF1170) 487.5 1.5e-143 1 PF00169.19.fs PH domain 73.4 7e-22 1 PF00536.20.fs SAM domain (Sterile alpha motif) 71.8 1.6e-20 1 PF00169.19.ls PH domain 75.4 1.6e-19 1 PF00536.20.ls SAM domain (Sterile alpha motif) 73.8 5.1e-19 1 PF07647.7.fs SAM domain (Sterile alpha motif) 49.7 6.4e-14 1 PF07647.7.ls SAM domain (Sterile alpha motif) 51.1 3.4e-12 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 27.6 4.4e-07 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 29.5 1.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07647.7.fs 1/1 25 90 .. 1 69 [. 49.7 6.4e-14 PF07647.7.ls 1/1 25 93 .. 1 72 [] 51.1 3.4e-12 PF00536.20.fs 1/1 26 90 .. 1 65 [] 71.8 1.6e-20 PF00536.20.ls 1/1 26 90 .. 1 65 [] 73.8 5.1e-19 PF00595.14.ls 1/1 234 311 .. 1 86 [] 29.5 1.1e-05 PF00595.14.fs 1/1 234 311 .. 1 86 [] 27.6 4.4e-07 PF06663.4.fs 1/1 349 532 .. 1 228 [] 487.5 1.5e-143 PF06663.4.ls 1/1 349 532 .. 1 228 [] 489.3 4.3e-144 PF00169.19.ls 1/1 588 686 .. 1 92 [] 75.4 1.6e-19 PF00169.19.fs 1/1 588 686 .. 1 92 [] 73.4 7e-22 Alignments of top-scoring domains: PF07647.7.fs: domain 1 of 1, from 25 to 90: score 49.7, E = 6.4e-14 *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed v+ ws+++v +W +++++ l +qY nF++ +i+g ++l lr+t+++ KIAA0902 25 VSKWSPSQVVDWMKGLddCL-QQYIKNFEREKISG-DQL-LRITHQE 68 LaklalGitsvghRkkilkkiqel<-* L + +lG++ gh+ il +++ l KIAA0902 69 L-E-DLGVSRIGHQELILEAVDLL 90 PF07647.7.ls: domain 1 of 1, from 25 to 93: score 51.1, E = 3.4e-12 *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed v+ ws+++v +W +++++ l +qY nF++ +i+g ++l lr+t+++ KIAA0902 25 VSKWSPSQVVDWMKGLddCL-QQYIKNFEREKISG-DQL-LRITHQE 68 LaklalGitsvghRkkilkkiqelkqq<-* L + +lG++ gh+ il +++ l KIAA0902 69 L-E-DLGVSRIGHQELILEAVDLLCAL 93 PF00536.20.fs: domain 1 of 1, from 26 to 90: score 71.8, E = 1.6e-20 *->dgwsfesVgeWLesigl....gqYidnFlsagyidgdtllqlteeDL + ws+++V +W++ gl++ +qYi+nF ++++i+gd+ll++t ++L KIAA0902 26 SKWSPSQVVDWMK--GLddclQQYIKNF-EREKISGDQLLRITHQEL 69 edlGvtllGHrkKIlssIqgLk<-* edlGv ++GH+ Il ++ +L KIAA0902 70 EDLGVSRIGHQELILEAV-DLL 90 PF00536.20.ls: domain 1 of 1, from 26 to 90: score 73.8, E = 5.1e-19 *->dgwsfesVgeWLesigl....gqYidnFlsagyidgdtllqlteeDL + ws+++V +W++ gl++ +qYi+nF ++++i+gd+ll++t ++L KIAA0902 26 SKWSPSQVVDWMK--GLddclQQYIKNF-EREKISGDQLLRITHQEL 69 edlGvtllGHrkKIlssIqgLk<-* edlGv ++GH+ Il ++ +L KIAA0902 70 EDLGVSRIGHQELILEAV-DLL 90 PF00595.14.ls: domain 1 of 1, from 234 to 311: score 29.5, E = 1.1e-05 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ k +glG+ ik+ d+ +++ ++ ++A++ +++ KIAA0902 234 QLANIK--PSEGLGMYIKSTYDG----LHVITGTTEN-SPADRCKKI 273 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +aGD +++vN q ++++++ v al++ ++ v Lt++ KIAA0902 274 HAGDEVIQVNHQTVVGWQLKNLVNALREDPS-GVILTLK 311 PF00595.14.fs: domain 1 of 1, from 234 to 311: score 27.6, E = 4.4e-07 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ k +glG+ ik+ d+ +++ ++ ++A++ +++ KIAA0902 234 QLANIK--PSEGLGMYIKSTYDG----LHVITGTTEN-SPADRCKKI 273 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +aGD +++vN q ++++++ v al++ ++ v Lt++ KIAA0902 274 HAGDEVIQVNHQTVVGWQLKNLVNALREDPS-GVILTLK 311 PF06663.4.fs: domain 1 of 1, from 349 to 532: score 487.5, E = 1.5e-143 *->sPeSTidtslKkeksAllDLYIPPPPAvPYsPRDEkgslPCedyrGh +P+STi+t++K+++sAl+DLYIPPPPA+PY+PRDEkg+lPCed+rGh KIAA0902 349 TPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGH 395 skgKqPLPvhKGSESPNSFLDQESyRrRFtIadsDqvLpgYsvEknvlpt ++gK PvhKGSESPNSFLDQE yR+RF+I+++D+vL++Y++Ek+++++ KIAA0902 396 MVGK---PVHKGSESPNSFLDQE-YRKRFNIVEEDTVLYCYEYEKGRSSS 441 kGrRekTPsYGKlRPlSMPadgNWvGivdpfakprgdgRkGEdaLlRYfS +GrRe+TP+YGKlRP+SMP+++NWvG++++++k+++d+R+ E++LlRY+S KIAA0902 442 QGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRR-ENSLLRYMS 490 NErItPiiEESaseeYrFsRPlTERHLVRGADYiRGSRCYiNSDLHSSAT NE+I a+eeY+F+R NS KIAA0902 491 NEKI-------AQEEYMFQR---------------------NS------- 505 iPFqeegtkKKSkssgdKssSPtepSLLvSl<-* +++t+KKSk++gdKs+SPt++SLL+Sl KIAA0902 506 ----KKDTGKKSKKKGDKSNSPTHYSLLPSL 532 PF06663.4.ls: domain 1 of 1, from 349 to 532: score 489.3, E = 4.3e-144 *->sPeSTidtslKkeksAllDLYIPPPPAvPYsPRDEkgslPCedyrGh +P+STi+t++K+++sAl+DLYIPPPPA+PY+PRDEkg+lPCed+rGh KIAA0902 349 TPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGH 395 skgKqPLPvhKGSESPNSFLDQESyRrRFtIadsDqvLpgYsvEknvlpt ++gK PvhKGSESPNSFLDQE yR+RF+I+++D+vL++Y++Ek+++++ KIAA0902 396 MVGK---PVHKGSESPNSFLDQE-YRKRFNIVEEDTVLYCYEYEKGRSSS 441 kGrRekTPsYGKlRPlSMPadgNWvGivdpfakprgdgRkGEdaLlRYfS +GrRe+TP+YGKlRP+SMP+++NWvG++++++k+++d+R+ E++LlRY+S KIAA0902 442 QGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRR-ENSLLRYMS 490 NErItPiiEESaseeYrFsRPlTERHLVRGADYiRGSRCYiNSDLHSSAT NE+I a+eeY+F+R NS KIAA0902 491 NEKI-------AQEEYMFQR---------------------NS------- 505 iPFqeegtkKKSkssgdKssSPtepSLLvSl<-* +++t+KKSk++gdKs+SPt++SLL+Sl KIAA0902 506 ----KKDTGKKSKKKGDKSNSPTHYSLLPSL 532 PF00169.19.ls: domain 1 of 1, from 588 to 686: score 75.4, E = 1.6e-19 *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs +eGwL+kk++ ++ + +wkk++fvL+d +L++y ++ ++k g KIAA0902 588 GDCEGWLWKKKdaksyFSQKWKKYWFVLKDASLYWYINEEdEKAEGF 634 ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa i+L + +++++++ ++k++F+ ++ ++++++ae +++++W++ i+++ KIAA0902 635 ISLPEFKIDRASECRKKYAFKACHpKIKSFYFAAEHLDDMNRWLNRINML 684 ir<-* + KIAA0902 685 TA 686 PF00169.19.fs: domain 1 of 1, from 588 to 686: score 73.4, E = 7e-22 *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs +eGwL+kk++ ++ + +wkk++fvL+d +L++y ++ ++k g KIAA0902 588 GDCEGWLWKKKdaksyFSQKWKKYWFVLKDASLYWYINEEdEKAEGF 634 ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa i+L + +++++++ ++k++F+ ++ ++++++ae +++++W++ i+++ KIAA0902 635 ISLPEFKIDRASECRKKYAFKACHpKIKSFYFAAEHLDDMNRWLNRINML 684 ir<-* + KIAA0902 685 TA 686 //